Literature DB >> 32551817

Machine Learning Classifier Models Can Identify Acute Respiratory Distress Syndrome Phenotypes Using Readily Available Clinical Data.

Pratik Sinha1,2, Matthew M Churpek3, Carolyn S Calfee1,2.   

Abstract

Rationale: Two distinct phenotypes of acute respiratory distress syndrome (ARDS) with differential clinical outcomes and responses to randomly assigned treatment have consistently been identified in randomized controlled trial cohorts using latent class analysis. Plasma biomarkers, key components in phenotype identification, currently lack point-of-care assays and represent a barrier to the clinical implementation of phenotypes.
Objectives: The objective of this study was to develop models to classify ARDS phenotypes using readily available clinical data only.
Methods: Three randomized controlled trial cohorts served as the training data set (ARMA [High vs. Low Vt], ALVEOLI [Assessment of Low Vt and Elevated End-Expiratory Pressure to Obviate Lung Injury], and FACTT [Fluids and Catheter Treatment Trial]; n = 2,022), and a fourth served as the validation data set (SAILS [Statins for Acutely Injured Lungs from Sepsis]; n = 745). A gradient-boosted machine algorithm was used to develop classifier models using 24 variables (demographics, vital signs, laboratory, and respiratory variables) at enrollment. In two secondary analyses, the ALVEOLI and FACTT cohorts each, individually, served as the validation data set, and the remaining combined cohorts formed the training data set for each analysis. Model performance was evaluated against the latent class analysis-derived phenotype.Measurements and Main
Results: For the primary analysis, the model accurately classified the phenotypes in the validation cohort (area under the receiver operating characteristic curve [AUC], 0.95; 95% confidence interval [CI], 0.94-0.96). Using a probability cutoff of 0.5 to assign class, inflammatory biomarkers (IL-6, IL-8, and sTNFR-1; P < 0.0001) and 90-day mortality (38% vs. 24%; P = 0.0002) were significantly higher in the hyperinflammatory phenotype as classified by the model. Model accuracy was similar when ALVEOLI (AUC, 0.94; 95% CI, 0.92-0.96) and FACTT (AUC, 0.94; 95% CI, 0.92-0.95) were used as the validation cohorts. Significant treatment interactions were observed with the clinical classifier model-assigned phenotypes in both ALVEOLI (P = 0.0113) and FACTT (P = 0.0072) cohorts.Conclusions: ARDS phenotypes can be accurately identified using machine learning models based on readily available clinical data and may enable rapid phenotype identification at the bedside.

Entities:  

Keywords:  ARDS phenotypes; classifier models; machine learning

Mesh:

Substances:

Year:  2020        PMID: 32551817      PMCID: PMC7528785          DOI: 10.1164/rccm.202002-0347OC

Source DB:  PubMed          Journal:  Am J Respir Crit Care Med        ISSN: 1073-449X            Impact factor:   21.405


  21 in total

1.  Subphenotypes in acute respiratory distress syndrome: latent class analysis of data from two randomised controlled trials.

Authors:  Carolyn S Calfee; Kevin Delucchi; Polly E Parsons; B Taylor Thompson; Lorraine B Ware; Michael A Matthay
Journal:  Lancet Respir Med       Date:  2014-05-19       Impact factor: 30.700

Review 2.  Phenotypes in acute respiratory distress syndrome: moving towards precision medicine.

Authors:  Pratik Sinha; Carolyn S Calfee
Journal:  Curr Opin Crit Care       Date:  2019-02       Impact factor: 3.687

3.  Nationwide trends of severe sepsis in the 21st century (2000-2007).

Authors:  Gagan Kumar; Nilay Kumar; Amit Taneja; Thomas Kaleekal; Sergey Tarima; Emily McGinley; Edgar Jimenez; Anand Mohan; Rumi Ahmed Khan; Jeff Whittle; Elizabeth Jacobs; Rahul Nanchal
Journal:  Chest       Date:  2011-08-18       Impact factor: 9.410

Review 4.  Clinical trials in acute respiratory distress syndrome: challenges and opportunities.

Authors:  Michael A Matthay; Daniel F McAuley; Lorraine B Ware
Journal:  Lancet Respir Med       Date:  2017-05-26       Impact factor: 30.700

5.  Why have clinical trials in sepsis failed?

Authors:  John C Marshall
Journal:  Trends Mol Med       Date:  2014-02-24       Impact factor: 11.951

6.  Acute Respiratory Distress Syndrome Subphenotypes Respond Differently to Randomized Fluid Management Strategy.

Authors:  Katie R Famous; Kevin Delucchi; Lorraine B Ware; Kirsten N Kangelaris; Kathleen D Liu; B Taylor Thompson; Carolyn S Calfee
Journal:  Am J Respir Crit Care Med       Date:  2017-02-01       Impact factor: 21.405

7.  Acute respiratory distress syndrome subphenotypes and differential response to simvastatin: secondary analysis of a randomised controlled trial.

Authors:  Carolyn S Calfee; Kevin L Delucchi; Pratik Sinha; Michael A Matthay; Jonathan Hackett; Manu Shankar-Hari; Cliona McDowell; John G Laffey; Cecilia M O'Kane; Daniel F McAuley
Journal:  Lancet Respir Med       Date:  2018-08-02       Impact factor: 30.700

8.  Higher versus lower positive end-expiratory pressures in patients with the acute respiratory distress syndrome.

Authors:  Roy G Brower; Paul N Lanken; Neil MacIntyre; Michael A Matthay; Alan Morris; Marek Ancukiewicz; David Schoenfeld; B Taylor Thompson
Journal:  N Engl J Med       Date:  2004-07-22       Impact factor: 91.245

Review 9.  Personalized diagnostics and biosensors: a review of the biology and technology needed for personalized medicine.

Authors:  Minhaz Uddin Ahmed; Ishtiaq Saaem; Pae C Wu; April S Brown
Journal:  Crit Rev Biotechnol       Date:  2013-04-22       Impact factor: 8.429

10.  Rosuvastatin for sepsis-associated acute respiratory distress syndrome.

Authors:  Jonathon D Truwit; Gordon R Bernard; Jay Steingrub; Michael A Matthay; Kathleen D Liu; Timothy E Albertson; Roy G Brower; Carl Shanholtz; Peter Rock; Ivor S Douglas; Bennett P deBoisblanc; Catherine L Hough; R Duncan Hite; B Taylor Thompson
Journal:  N Engl J Med       Date:  2014-05-18       Impact factor: 91.245

View more
  28 in total

Review 1.  Phenotyping in acute respiratory distress syndrome: state of the art and clinical implications.

Authors:  Narges Alipanah; Carolyn S Calfee
Journal:  Curr Opin Crit Care       Date:  2022-02-01       Impact factor: 3.687

2.  Validation and utility of ARDS subphenotypes identified by machine-learning models using clinical data: an observational, multicohort, retrospective analysis.

Authors:  Manoj V Maddali; Matthew Churpek; Tai Pham; Emanuele Rezoagli; Hanjing Zhuo; Wendi Zhao; June He; Kevin L Delucchi; Chunxue Wang; Nancy Wickersham; J Brennan McNeil; Alejandra Jauregui; Serena Ke; Kathryn Vessel; Antonio Gomez; Carolyn M Hendrickson; Kirsten N Kangelaris; Aartik Sarma; Aleksandra Leligdowicz; Kathleen D Liu; Michael A Matthay; Lorraine B Ware; John G Laffey; Giacomo Bellani; Carolyn S Calfee; Pratik Sinha
Journal:  Lancet Respir Med       Date:  2022-01-10       Impact factor: 102.642

Review 3.  Update in Critical Care 2020.

Authors:  Robinder G Khemani; Jessica T Lee; David Wu; Edward J Schenck; Margaret M Hayes; Patricia A Kritek; Gökhan M Mutlu; Hayley B Gershengorn; Rémi Coudroy
Journal:  Am J Respir Crit Care Med       Date:  2021-05-01       Impact factor: 21.405

Review 4.  Precision medicine in acute respiratory distress syndrome: workshop report and recommendations for future research.

Authors:  Lieuwe D J Bos; Antonio Artigas; Jean-Michel Constantin; Laura A Hagens; Nanon Heijnen; John G Laffey; Nuala Meyer; Laurent Papazian; Lara Pisani; Marcus J Schultz; Manu Shankar-Hari; Marry R Smit; Charlotte Summers; Lorraine B Ware; Raffaele Scala; Carolyn S Calfee
Journal:  Eur Respir Rev       Date:  2021-02-02

5.  Blood DNA methylation and COVID-19 outcomes.

Authors:  Joseph Balnis; Andy Madrid; Kirk J Hogan; Lisa A Drake; Hau C Chieng; Anupama Tiwari; Catherine E Vincent; Amit Chopra; Peter A Vincent; Michael D Robek; Harold A Singer; Reid S Alisch; Ariel Jaitovich
Journal:  Clin Epigenetics       Date:  2021-05-25       Impact factor: 6.551

6.  How severe COVID-19 infection is changing ARDS management.

Authors:  Niall D Ferguson; Tài Pham; Michelle Ng Gong
Journal:  Intensive Care Med       Date:  2020-09-18       Impact factor: 17.440

7.  Phenotypes of severe COVID-19 ARDS receiving extracorporeal membrane oxygenation.

Authors:  Joe Zhang; Stephen F Whebell; Barney Sanderson; Andrew Retter; Kathleen Daly; Richard Paul; Nicholas Barrett; Sangita Agarwal; Boris E Lams; Christopher Meadows; Marius Terblanche; Luigi Camporota
Journal:  Br J Anaesth       Date:  2020-12-26       Impact factor: 9.166

Review 8.  Utilizing Artificial Intelligence in Critical Care: Adding A Handy Tool to Our Armamentarium.

Authors:  Munish Sharma; Pahnwat T Taweesedt; Salim Surani
Journal:  Cureus       Date:  2021-06-08

Review 9.  Current and evolving standards of care for patients with ARDS.

Authors:  Mario Menk; Elisa Estenssoro; Sarina K Sahetya; Ary Serpa Neto; Pratik Sinha; Arthur S Slutsky; Charlotte Summers; Takeshi Yoshida; Thomas Bein; Niall D Ferguson
Journal:  Intensive Care Med       Date:  2020-11-06       Impact factor: 17.440

10.  Machine Learning-Based Discovery of a Gene Expression Signature in Pediatric Acute Respiratory Distress Syndrome.

Authors:  Jocelyn R Grunwell; Milad G Rad; Susan T Stephenson; Ahmad F Mohammad; Cydney Opolka; Anne M Fitzpatrick; Rishikesan Kamaleswaran
Journal:  Crit Care Explor       Date:  2021-06-15
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.