Md Mahedi Hasan1, Tamanna Islam1, Sayeda Sima Akter1, Nabeel H Alharthi2, Mohammad R Karim3,4, Md Abdul Aziz5, Abdul Awal1, Md Delwar Hossain1, A J Saleh Ahammad1. 1. Department of Chemistry, Jagannath University, Dhaka 1100, Bangladesh. 2. Mechanical Engineering Department, College of Engineering, King Saud University, Riyadh 11421, Saudi Arabia. 3. Center of Excellence for Research in Engineering Materials, King Saud University, Riyadh 11421, Saudi Arabia. 4. K.A.CARE Energy Research and Innovation Center, Riyadh 11451, Saudi Arabia. 5. Center of Research Excellence in Nanotechnology, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia.
Abstract
Here, we report a semiempirical quantum chemistry computational approach to understanding the electrocatalytic reaction mechanism (ERM) of a metallic supramolecular polymer (SMP) with nitrite through UV/vis spectral simulations of SMP with different metal oxidation states before and after interactions with nitrite. In one of our recent works, by analyzing the electrochemical experimental data, we showed that computational cyclic voltammetry simulation (CCVS) can be used to predict the possible ERM of heterometallo-SMP (HMSMP) during electrochemical oxidation of nitrite (Islam T.ACS Appl. Polym. Mater.2020, 2( (2), ), 273-284). However, CCVS cannot predict how the ERM happens at the molecular level. Thus, in this work, we simulated the interactions between the repeating unit (RU) of the HMSMP polyNiCo and nitrite to understand how the oxidation process took place at the molecular level. The RU for studying the ERM was confirmed through comparing the simulated UV/vis and IR spectra with the experimental spectra. Then, the simulations between the RU of the polyNiCo and various species of nitrite were done for gaining insights into the ERM. The simulations revealed that the first electron transfer (ET) occurred through coordination of NO2 - with either of the metal centers during the two-electron-transfer oxidation of nitrite, while the second ET followed a ligand-ligand charge transfer (LLCT) and metal-ligand charge transfer (MLCT) pathway between the NO2 species and the RU. This ET pathway has been proposed by analyzing the transition states (TSs), simulated UV/vis spectra, energy of the optimized systems, and highest occupied molecular orbital-lowest occupied molecular orbital (HOMO-LUMO) interactions from the simulations between the RU and nitrite species.
Here, we report a semiempirical quantum chemistry computational approach to understanding the electrocatalytic reaction mechanism (ERM) of a metallic supramolecular polymer (SMP) with nitrite through UV/vis spectral simulations of SMP with different metal oxidation states before and after interactions with nitrite. In one of our recent works, by analyzing the electrochemical experimental data, we showed that computational cyclic voltammetry simulation (CCVS) can be used to predict the possible ERM of heterometallo-SMP (HMSMP) during electrochemical oxidation of nitrite (Islam T.ACS Appl. Polym. Mater.2020, 2( (2), ), 273-284). However, CCVS cannot predict how the ERM happens at the molecular level. Thus, in this work, we simulated the interactions between the repeating unit (RU) of the HMSMP polyNiCo and nitrite to understand how the oxidation process took place at the molecular level. The RU for studying the ERM was confirmed through comparing the simulated UV/vis and IR spectra with the experimental spectra. Then, the simulations between the RU of the polyNiCo and various species of nitrite were done for gaining insights into the ERM. The simulations revealed that the first electron transfer (ET) occurred through coordination of NO2 - with either of the metal centers during the two-electron-transfer oxidation of nitrite, while the second ET followed a ligand-ligand charge transfer (LLCT) and metal-ligand charge transfer (MLCT) pathway between the NO2 species and the RU. This ET pathway has been proposed by analyzing the transition states (TSs), simulated UV/vis spectra, energy of the optimized systems, and highest occupied molecular orbital-lowest occupied molecular orbital (HOMO-LUMO) interactions from the simulations between the RU and nitrite species.
Of late, supramolecular polymers (SMPs) have become one of the
most active research areas in the field of supramolecular chemistry.[1−7] Extending beyond the normal covalent bonding system usually observed
in polymer molecules, SMPs incorporate non-covalent-type interactions
for creating supramolecular monomer (SMM) assemblies, which in turn
control SMP conformation and behavior.[2,8] These unique
traits have given rise to the functional SMPs, where SMPs have ordered
shape through self-assembly of designed SMMs.[4,7] These
functional SMPs are capable of self-healing or inherent degradation,
have good biocompatibility, and have been shown to have excellent
applications in the fields of electronics.[4,9] Of
these functional SMPs, metallo-SMPs (MSMPs) that form through coordination
bonding have been extensively applied as electrocatalysts in the field
of electrochemistry for fabricating electrochromic devices, supercapacitors,
molecular CO2 reduction photocathodes, O2 evolution,
dye-sensitized solar cells, etc.[5,9−11] It is essential to understand the electrocatalytic reaction mechanism
(ERM) of these SMPs for designing effective electrocatalysts to reduce
production cost, lower material wastage, and increase catalytic efficacy
of the SMP. Recently, Leung et al. studied the ERM of a cobalt (Co)-bis(terpyridine)-based
photocathode for CO2 reduction using Raman and attenuated
total reflection-infrared (ATR-IR) spectroelectrochemical techniques.[10] Through analyzing the results, they showed that
the catalytic mechanism of immobilized and soluble Co-bis(terpyridine)
SMPs differs significantly.[10]Another
area of the electrochemistry where MSMPs can be applied
as potent electrocatalysts is in the field of electrochemical sensing.[1,11] In our recent work, we have shown that Ni–Co-based heterometallo-SMP
(HMSMP) (polyNiCo) can be used for nonenzymatic oxidation of nitrite
(NO2–).[1] NO2– is an important inorganic environmental
pollutant.[12,13] In this particular case, the
HMSMP itself is electrochemically active (both metal centers and the
surrounding ligand) and therefore the most preferable way for transferring
electrons from surrounding analytes is to allow metal–analyte
coordination into the SMP moiety under the applied potential through
metal–ligand charge transfer (MLCT) and ligand–ligand
charge transfer (LLCT).[1]Like most
works involving electrochemistry, we too predicted the
catalytic process of this HMSMP electrocatalyst based on the electrochemical
experimental results. Others also used in vivo spectroscopic analysis
and educated guesses.[10,14] However, both the educated guess
method and electrochemical experimental results fail to account for
the physicochemical processes at the electrode–electrolyte
interface accurately.[15] On top of that,
the in vivo spectroscopic analysis requires expert handling and highly
controlled environment.[15]Computational
simulation (CPS) of the electron transfer (ET) process
at the electrode–electrolyte interface can help elucidate the
accurate ERM of electrocatalysts during the ET phenomena while overcoming
the difficulties faced by the in vivo spectroscopic analysis.[15−17] To address this challenging task, one would have to verify the structure
of the MSMP with its characteristic properties at the molecular level.
This can be done by finding the lowest-energy molecular system through
optimizing the geometry of the possible structures of the repeating
unit (RU) of the synthesized SMP.[15,18] However, using
density functional theory (DFT)-based methods for CPS for systems
that have many atoms and different types of bonds requires very high
processing power, and even then they are time-consuming.[15,17] The alternative to this is using semiempirical quantum chemistry
methods (SEQCMs) that can give good approximation within a short period
of time.[18] Hakan, K. & Timothy, C.
showed that the AM1* parameter of the neglect of diatomic differential
overlap (NDDO) can provide more accurate information about the catalytic
process of organometallic compounds containing Ni and Co transition
metals compared to other semiempirical quantum chemistry method parameters.[18] Thus, the optimization of the RU can be accomplished
using the AM1* NDDO (neglect of diatomic differential overlap) CPS
method for the polyNiCo HMSMP.[18,19] Then, it is possible
to simulate the UV/vis and IR spectra of these optimized structures
through electronic and vibrational frequency excitation calculations
to verify whether they match with the experimental findings.[20] Zerner et al.[20] and
Li et al.[21] showed that the spectroscopic
data for the Ni- and Co-based organic systems can be simulated using
the INDO/2 ZINDO (Zerner’s intermediate neglect of differential
overlap) SEQCM. After establishing the molecular model for the SMP,
the ERM of the SMP with the analyte at the interfacial region can
be established through analysis of the highest occupied molecular
orbital–lowest occupied molecular orbital (HOMO–LUMO),
UV/vis spectral changes, thermodynamic properties, charge distribution,
and the TS optimization of the interactions between the SMP and the
analyte using the previously mentioned methods.Hence, in this
work, we have attempted to establish the ERM of
polyNiCo HMSMP for nonenzymatic oxidation of NO2– using the SEQC CPS method. For this purpose, we prepared several
possible molecular models of the RU of the polyNiCo and optimized
them using the AM1* NDDO Hamiltonian. We simulated the spectroscopic
data of the optimized polyNiCo HMSMPs using the INDO/2 ZINDO method
and compared it with the experimental results. Finally, we studied
the interaction of the polyNiCo with NO2– through studying UV/vis data that illustrated the energy changes
associated with the frontier molecular orbitals (HOMO–LUMO)
in the polyNiCo system, along with charge distribution. Based on the
results of our analysis, we have proposed the ERM pathway for the
nonenzymatic NO2– oxidation at the polyNiCoHMSMP. Here, we have used the SEQC-based general CPS method for determining
the ERM of SMPs that can be applied to future works involving MSMPs
or HMSMPs and redox processes.
Results and Discussion
Confirming the Structure of the RU through
Spectroscopic Analysis
To verify the structure of the repeating
unit (RU) of the simulated polyNiCo, we have compared the simulated
UV/vis spectrum of the optimized polyNiCoRU structures with the experimental
spectrum. In our recent work, through UV/vis spectrophotometric titrations,
we confirmed that the synthesized polymer had a linear chain structure
with random distribution of metals into the polymer chain.[1] Also, the electrochemical characterization of
the polyNiCo showed that both metals are electrochemically active
and have different oxidation states (+1, +2, and +3 oxidation states)
while in the SMP system.[1] Thus, to understand
the molecular properties of the polyNiCo, we have performed simulations
of the RUcontaining metal atoms of different oxidation states. We
have prepared and optimized six different molecular models of RU by
changing metal positions for the computational simulations. These
were, namely, (a) Co(II)LNi(II)LCo(II) (Figure S1a), (b) Ni(II)LCo(II)LNi(II) (Figure S2a), (c) Ni(II)LCo(I) (Figure S3a), (d) Ni(I)LCo(I) (Figure S4a), (e) Ni(II)LCo(III)
(Figure S5a), and (f) Ni(II)LCo(II) (Figure a). The Roman numeral
indicates the oxidation state of the metals in the molecular system.
Later, the simulated UV/vis spectra were derived for all six simulated
RUs using the theory detailed in Section . It was observed that the RU system (f)
Ni(II)LCo(II) showed a better match with the experimental UV/vis spectrum,
confirming that the synthesized polymer had Ni and Cometals with
similar oxidation states. This is also in accordance with the result
that we obtained from the electrochemical characterization experiment
of polyNiCo.[1] The experimentally simulated
UV/vis spectra for Ni(II)LCo(II) are shown in Figure S6b.
Figure 1
Computational simulation of the Ni(II)LCo(II) repeat unit.
(a)
Optimized structure of the Ni(II)LCo(II) repeating unit. UV/vis spectra
of the real (polyNiCo) (b) and the simulated (Ni(II)LCo(II)) (c) supramolecular
polymer. (d) Simulated IR spectrum of Ni(II)LCo(II).
Computational simulation of the Ni(II)LCo(II) repeat unit.
(a)
Optimized structure of the Ni(II)LCo(II) repeating unit. UV/vis spectra
of the real (polyNiCo) (b) and the simulated (Ni(II)LCo(II)) (c) supramolecular
polymer. (d) Simulated IR spectrum of Ni(II)LCo(II).As seen in Figure a, the optimized Ni(II)LCo(II) structure for the Ni and Co
system
shows octahedral complexation. This is the common complexation way
for both the Ni2+ ([Ar] 3d8) and Co2+ ([Ar] 3d7) atomic systems when coordinating with ligands
through six sites.[9,10] For comparison, the simulated
UV/vis spectra of the Ni(II)LCo(II) structure and experimentally obtained
UV/vis spectra of polyNiCo are shown in Figure b,c. The experimentally obtained UV/vis spectrum
shows two distinct absorptions bands at 285.94 and 330.29 nm. These
absorptions bands are assigned to the metal-to-ligand charge transfer
(MLCT) (dπ–pπ* transition) processes for the complexation
of Ni(II) and Co(II) ions with the ligand.[1,15,22] A single small d–d transition band
is also observed at 525 nm. The simulated UV/vis spectrum of the Ni(II)LCo(II)
system shows spectral bands almost similar to those of that observed
from the experiment. The first characteristic band is found at around
285 nm, which matches with the experimentally observed band for the
complexation of the Ni(II) ion with the ligand terpyridine moiety.
However, the second band shows a slight red shift compared to the
experimental band and is observed at around 394 nm wavelength. This
band is likely due to the MLCT process for the complexation of the
Co(II) ion to the terpryridine moiety of the ligand. However, in the
simulated spectrum, there is no peak at around 525 nm for the d–d
transition. Hence, it is likely that in the simulated spectrum the peaks for MLCT for Co(II) ions and d–d transitions were not
resolved. As a result, we got a slightly shifted broad peak at around
394 nm wavelength instead of two individual peaks at around 330 and
525 nm. We have also simulated the ligand structure and generated
the corresponding UV/vis spectrum using the same level of the theory
(Figure S7). The spectrum showed a large
number of peaks mainly responsible for the intraligand charge transfer
(ILCT) process, indicating a greater number of electronic transitions
(ETs) between different HOMOs and LUMOs. This again confirms that
the resulting bands observed at 285 and 394 nm in the Ni(II)LCo(II)
system are mainly due to the MLCT-type ETs as shown in Figure c.For the simulated
system Co(II)LNi(II)LCo(II) (Figure S1f), a sharp absorption band was observed at 300 nm,
indicating the MLCT process, while the Ni(II)LCo(II)LNi(II) system
(Figure S2f) showed a sharp band at around
330 nm. Both of these systems showed only a single peak. The reason
for this might be the presence of two metallic ions of same type in
these systems. As a result, the peak for MLCT with one type of metal
ion (Ni or Co) became more pronounced and the simulation could not
resolve the peaks. This caused the simulated spectrum to show a single
peak corresponding to the metal that had two ions in the Co(II)LNi(II)LCo(II)
and Ni(II)LCo(II)LNi(II) systems. These findings indicate that the
ratio of the metals in the polymer chain has a great influence on
the spectrum. The Ni(II)LCo(I) system displayed three bands for the
ILCT process at 180, 230, and 250 nm. A MLCT band at 272 nm and a
d–d transition band at 541 nm were also observed. (d) Ni(I)LCo(I)
and (e) Ni(II)LCo(III) showed mainly MLCT and d–d transition
bands (Figures S3–S5).[22,23]Electrostatic potential mappings (ESPMs) for six RU simulations
are shown in Figures S1–S6. The
Ni(II)LCo(II) system mostly has blue coloring in the ESPM (Figure S6). This even distribution of potential
indicates a stable RU with octahedral shape. Other simulated RU showed
similar blue coloring except for the RU with Ni metals. In this case,
the ESP distribution is uneven, resulting in greenish red color over
the molecular system (Figure S2).Figure d represents
the simulated IR spectrum obtained for the Ni(II)LCo(II) system. The
simulated IR spectrum of the Ni(II)LCo(II) system matched considerably
with the experimental Fourier transform infrared (FT-IR) spectrum
of polyNiCo.[1] The assignments of different
bands of the real IR spectrum are tabulated in Table . The simulated spectrum shows several bands
for stretching and bending motions in the following regions: 1400–1600,
1250–1000, and 600 cm–1. However, the real
experimental FT-IR spectrum showed a prominent broad band at 1200–1000
cm–1 and a sharp band at 800 cm–1.[1] On the other hand, the fingerprint
region (1400–1600 cm–1) regarding the terpyridine
unit was more intense in the simulated spectrum. This difference in
the spectra was perhaps due to the fact that the simulated spectrum
is obtained for a single RU, whereas the experimentally observed spectrum
was for the polymer as a whole. These analyses confirm that the Ni(II)LCo(II)
system would be the best approximation for the polyNiCo supramolecular
polymer (SMP). Henceforth, we will focus our analysis on this Ni(II)LCo(II)
molecular system.
Table 1
Assignment of IR Data of the Simulated
and Experimental Spectra[10]
IR
ν (cm–1)
430a
512a
571
635a
630–850a
1020–1300a
assignment
Ni―N
ν(C―C), ν(C―N),
δ(C―H)
ring breathing
Co―N
γ(C―H)
ν(C―C), υ(C―N)
Observed spectra
for the experimental
data.
Observed spectra
for the experimental
data.
Frontier
Molecular Orbital and Charge Distribution
Analyses of the RU
The molecular orbital analysis shows that
the HOMO and LUMO of the Ni(II)LCo(II) system are located mostly around
the Co atom. As can be seen from Figure a,b, the highest density of the delocalized
HOMO is over the Co atom, with the rest being contributed by the surrounding
N and C atoms. Thus, it is likely that the d and p orbitals of the
Co,N, and C atoms would contribute to the ET process mostly. On the
other hand, the LUMO is mostly distributed over the benzene ring adjacent
to the Co atom, with very little distribution over the Co atom itself
(Figure b). However,
this analysis also raises the question that how this distribution
of the HOMO–LUMO might alter in an actual chain of the polymer. Figures S1c,d and S2c,d show how the HOMO–LUMO
distribution might have taken place at the actual polymer chains with
random metal atom distribution. As we see from Figure S1, the HOMO is distributed mostly over the Co atom,
but in this case, the LUMO is distributed over the Ni atom. This may be
due to the fact that the Co atom contains a 3d7-like configuration
while the Ni atom contains a 3d8 configuration, thus allowing
the LUMO to be centered on it.[24]Figure S2 shows almost the opposite conditions
for HOMO–LUMO distribution compared to Figures and S1. In this
case, the HOMO is located at the benzene ring at the side of the Ni
atom, while the LUMO is centered on the Co atom, mostly. The reason
for such behavior may be that the two Ni atoms surround the Co atom.
The metal-to-metal-type interaction between the Ni and Co species
might be responsible here. Based on these analyses, we can expect
that the HOMO is most likely to be centered on the Co atom except
when it is flanked by Ni atoms on both sides of the ligand.
Figure 2
(a, b) HOMO
and LUMO on Ni(II)LCo(II), respectively. (c) Coulson
charges for each atom in the Ni(II)LCo(II) system. A reversed rainbow
color mapping was used for all of the figures. In this scheme, the
color changes from blue to yellow with decreasing negative charge.
(a, b) HOMO
and LUMO on Ni(II)LCo(II), respectively. (c) Coulson
charges for each atom in the Ni(II)LCo(II) system. A reversed rainbow
color mapping was used for all of the figures. In this scheme, the
color changes from blue to yellow with decreasing negative charge.The Coulson charge distribution shows the noninteger
charge of
atoms as a part of the molecule. Figure c shows that the Ni and Co atoms have charges
around 0.523 and 0.323e–, respectively. Figures S1 and S2 show that the charges on the
Ni atom vary from ∼0.5 to 0.6e–, while they
are ∼0.3–0.5e– for the Co atoms. At
the same time, the charges on the N atomscoordinating with the Co
and Ni species are almost always negative, indicating that charge
transfer takes place from the metal to the ligand. However, a few
positive-charge-carrying N atoms point at back-donation by the ligand
to the metal during this charge transfer process, which in turn strengthens
the coordination complex.
Computational Analysis
for Describing the
Reaction Pathway
To investigate how the NO2– ion interacted with the polyNiCo prior to the irreversible
electron transfer, we have utilized two different RUs based on the
metal’s oxidation states around ∼0.8 V as the substrate,
namely, Ni(II)LCo(II) and Ni(II)LCo(III). The optimized structure
and UV/vis spectra of the Ni(II)LCo(III) system are shown in Figure S5. These RUs were chosen due to the fact
that the Co center was likely to exist in the +3 oxidation state in
our experimental potential window during NO2– oxidation.[1] Based on our analysis of
the electrochemical experimental data, we previously proposed the
following probable pathway for NO2– oxidation
at the polyNiCo HMSMP[1]Thus, in this work, we have used semiempirical
quantum chemistry theory to understand how the ET process during the
oxidation of NO2– occurred at the molecular
level and determine the electrocatalytic reaction mechanism (ERM)
pathway.
ET through MLCT and LLCT Pathway for Nitrite
Oxidation
According to this reaction pathway, the active
sites are located on the ligand sphere at which nitrite species attacks
through the interfacial region. Since the ligand itself is electrochemically
active, it is likely to interact with nitrite species for facilitating
the ET process. Through computational simulations, we have analyzed
the following properties:The
changes associated with the distributions of the
HOMO–LUMO of the optimized systems before and after placing
analytes in different positions near the RUs.The changes in the UV/vis spectra before and after interactions
between the RUs and the analytes.The
nature of ET processes based on the observed UV/vis
spectra.The HOMO–LUMO distribution
for the interaction
between Ni(II)LCo(III) and NO2– at position
1 (P1) is shown in Figure a, and it is denoted as the Ni(II)LCo(III)_NO2– system. It can be seen that the HOMO in this case
mostly resides on the NO2– ion and the
pyridine ring of the terpyridine moiety connected with the Ni(II)metal, while the LUMO is concentrated around the Co(III) center of
the RU. This finding is important as it suggests the possible pathway
for ET between the polymerRU and nitrite ion. According to the observed
pattern of HOMO–LUMO, when nitrite closely approaches the RU
at position 1, it is likely that the ET occurs from the HOMO of NO2– to the LUMO located around the Co center.
For all of the molecular systems, the eigenvalues related to the HOMO–LUMO
and the next four orbitals located after HOMO and LUMO are given in Table S1.
Figure 3
HOMO and LUMO distributions for (a) Ni(II)LCo(III)_NO2–, (b) Ni(II)LCo(III)_NO2 + H2O, and Ni(II)LCo(II)_NO2 + H2O (c);
Ni(II)LCo(III)_NO2 (d); and Ni(II)LCo(II)_NO2 (e). The figures show
the analytes (NO2–, NO2 +
H2O, and NO2) when they were placed at a distance
of approximately 3.5 Å from the RU systems. This was denoted
position 1 (P1) among the seven positions where analytes were placed.
A reversed rainbow color mapping was used for all of the figures.
In this scheme, the color changes from blue to yellow with decreasing
negative charge.
HOMO and LUMO distributions for (a) Ni(II)LCo(III)_NO2–, (b) Ni(II)LCo(III)_NO2 + H2O, and Ni(II)LCo(II)_NO2 + H2O (c);
Ni(II)LCo(III)_NO2 (d); and Ni(II)LCo(II)_NO2 (e). The figures show
the analytes (NO2–, NO2 +
H2O, and NO2) when they were placed at a distance
of approximately 3.5 Å from the RU systems. This was denoted
position 1 (P1) among the seven positions where analytes were placed.
A reversed rainbow color mapping was used for all of the figures.
In this scheme, the color changes from blue to yellow with decreasing
negative charge.The simulated UV/vis
spectrum for this Ni(II)LCo(III)_NO2– system exhibits four bands. The two bands at
around 360 and 510 nm (Figure S8a) are
readily observable from the spectrum, while the other two bands have
very low intensity and are almost invisible in the spectrum. This
is completely different than the UV/vis spectra of the Ni(II)LCo(II)
(285 and 330 nm) and Ni(II)LCo(III) (360 and 570 nm) systems as shown
in Figures and S5. The most intense band at 510 nm corresponds
to the n–π* transition, indicating the
charge transfer ability from the nonbonding HOMO of NO2– to the Co-centered LUMO. The other band at 360 nm indicates the
π–π* transition corresponding to the MLCT and LLCT
processes. This electronic transition for Ni(II)LCo(III)_NO2– is shown in Figure c, which reveals HOMO–LUMO+1 and HOMO–1–LUMO+1 transitions,
indicating n–π* and π–π*
transitions. The other two transitions require a high excitation energy,
which is likely responsible for their weak absorption intensity. The
corresponding ETs in the Ni(II)LCo(III) system also showed n–π* and π–π* transitions
(Figure b). However,
the n–π* transition in the presence
of NO2– resulted in a blue shift and
the π–π* transition in a red shift.
Figure 4
Diagram representing
electronic transitions in different orbitals
for the Ni(II)LCo(II) (a), Ni(II)LCo(III) (b), Ni(II)LCo(III)_NO2– (c), Ni(II)LCo(II)_NO2 + H2O (d), Ni(II)LCo(III)_NO2 + H2O (e),
Ni(II)LCo(II)_NO2 (f), and Ni(II)LCo(III)_NO2 (g) systems.
Diagram representing
electronic transitions in different orbitals
for the Ni(II)LCo(II) (a), Ni(II)LCo(III) (b), Ni(II)LCo(III)_NO2– (c), Ni(II)LCo(II)_NO2 + H2O (d), Ni(II)LCo(III)_NO2 + H2O (e),
Ni(II)LCo(II)_NO2 (f), and Ni(II)LCo(III)_NO2 (g) systems.Figure b,c shows
the HOMO–LUMO distributions for the systems Ni(II)LCo(III)_NO2 + H2O and Ni(II)LCo(II)_NO2 + H2O, respectively. This pair of NO2 + H2O is chosen because these species are likely involved in the process
of transferring the second electron to the electrode. The HOMO–LUMO
pattern of these two systems shows the NO2 as the HOMO,
while the LUMO is mostly seen around the terpyridine moiety attached
to the Ni (II) center in the Ni(II)LCo(III)_NO2 + H2O (Figure b) system and randomly on the pyridine ring over the whole RU in
the Ni(II)LCo(II)_NO2 + H2O (Figure c) system.The simulated
UV/vis spectrum of the Ni(II)LCo(III)_NO2 + H2O (Figure b) system
showed ETs mostly corresponding to π–π*
bands, while the Ni(II)LCo(II)_NO2 + H2O (Figure c) system displayed
peaks corresponding to both n–π* and
π–π* transitions. The ETs observed for these systems
are shown in Figure , represented as Ni(II)LCo(II)_NO2 + H2O (Figure d) and Ni(II)LCo(III)_NO2 + H2O (Figure e). The transitions observed are from HOMO to LUMO+4 (2.04 eV), HOMO–1 to LUMO+1 (2.36 eV), and HOMO–2 to LUMO (3.82 eV). These
are responsible for the UV/vis bands in the Ni(II)LCo(II)_NO2 + H2O system at 580 (n–π*),
540 (d–d), and 360 (π–π*) nm, respectively
(Figure d). However,
the Ni(II)LCo(III)_NO2 + H2O (Figure e) system shows two high-energy
ETs from HOMO to LUMO and HOMO–1 to LUMO, among
which the HOMO–LUMO transition indicates the π–π*
transition observed at 300 nm in the UV/vis spectrum (Figure S8). Overall, NO2 + H2O showed relatively significant interaction with the Ni(II)LCo(II)
system compared to Ni(II)LCo(III). The calculated binding energy (Eb) for the Ni(II)LCo(II)_NO2 + H2O system for all positions was more negative compared to that
for the Ni(II)LCo(III)_NO2 + H2O system. The
calculated energy values from all of the optimized systems are given
in Table S2. The Eb value calculations for the different interaction systems
were done using the following equations[16,17]In these equations, the Eb values for different systems were calculated using the
total energy values from Table S2. The
results of Eb for these systems are shown
in Table . The highly
negative Eb values for systems including
RU and NO2– indicate a strong chemical
interaction between them.[15,17] This highly negative Eb value could be due to the distortion of the
coordination sphere during the interaction between the RU and NO2–. On the other hand, the less negative Eb values of systems containing RU, H2O, and NO2 indicate that the interaction only happened
weakly and that there was probably no distortion of the ligand sphere.
These Eb values further confirm our assumptions
regarding the oxidation ERM pathway of NO2– at the polyNiCo HMSMP interface.
Table 2
Eb Values
for the Optimized Systems Calculated Using Equations –4
system
binding energy (eV)
Eb(Ni(II)LCo(II)_NO2–_P1)
–11.72629
Eb(Ni(II)LCo(II)_NO2–_P2)
–10.631244
Eb(Ni(II)LCo(II)_NO2–_P3)
–10.462161
Eb(Ni(II)LCo(II)_NO2–_P4)
–10.630841
Eb(Ni(II)LCo(II)_NO2–_P5)
–10.105292
Eb(Ni(II)LCo(II)_NO2–_P6)
–10.586003
Eb(Ni(II)LCo(II)_NO2–_P7)
–10.212243
Eb(Ni(II)LCo(III)_NO2–_P1)
–11.189306
Eb(Ni(II)LCo(III)_NO2–_P2)
–11.20155
Eb(Ni(II)LCo(III)_NO2–_P3)
–11.171779
Eb(Ni(II)LCo(III)_NO2–_P4)
–11.171779
Eb(Ni(II)LCo(III)_NO2–_P5)
–11.164901
Eb(Ni(II)LCo(III)_NO2–_P6)
–11.195933
Eb(Ni(II)LCo(III)_NO2–_P7)
–11.106205
Eb(Ni(II)LCo(II)_NO2_H2O_P1)
–3.950345
Eb(Ni(II)LCo(II)_NO2_H2O_P2)
–3.473489
Eb(Ni(II)LCo(II)_NO2_H2O_P3)
–3.940463
Eb(Ni(II)LCo(II)_NO2_H2O_P4)
–3.445143
Eb(Ni(II)LCo(II)_NO2_H2O_P5)
–3.211066
Eb(Ni(II)LCo(II)_NO2_H2O_P6)
–3.814611
Eb(Ni(II)LCo(II)_NO2_H2O_P7)
–3.895515
Eb(Ni(II)LCo(III)_NO2_H2O_P1)
–1.005134
Eb(Ni(II)LCo(III)_NO2_H2O_P2)
–0.420827
Eb(Ni(II)LCo(III)_NO2_H2O_P3)
–0.95545
Eb(Ni(II)LCo(III)_NO2_H2O_P4)
–1.000385
Eb(Ni(II)LCo(III)_NO2_H2O_P5)
–1.216798
Eb(Ni(II)LCo(III)_NO2_H2O_P6)
–0.486939
Eb(Ni(II)LCo(III)_NO2_H2O_P7)
–0.98457
We have also analyzed the interactions
of NO2 with the
Ni(II)LCo(III) and Ni(II)LCo(II) RUs based on HOMO–LUMO distribution
(Figure d,e), UV/vis
spectral analysis (Figure S8), and the
ETs based on their corresponding eigenvalues due to interactions (Figure f,g). It can be seen
that NO2 alone can show ETs due to interactions with the
RUs.The Coulson charge analysis of the optimized species also
confirms
the changes in the net noninteger charges of the individual atoms
of the RUs and the nitrite species
(Figures and S9–S11). While the nitrite species become
neutral, the metal centers bear a negative charge at the optimized
system. This further confirms our analysis that the MLCT and the LLCT
play an important role in enhancing the electrocatalytic activity
of the metallic SMPs.These computational simulations demonstrate
that the NO2 can interact with the ligand sphere or the
metalcoordination sphere
while keeping the metalcoordination sphere and ligand hapticity unaltered,
while the NO2– is likely to interact
through coordination with metal centers. The mechanism of such indirect
irreversible ET process probably involves transferring of electrons
from NO2 to the coordinated bisterpyridine ligand via the
LLCT process followed by the transfer of charge from the ligand to
the metal via the LMCT process.
Direct
Coordination of Nitrite with the
Metal in the Complex via Opening Coordination Site
In this
direct metal–NO2– interaction
pathway, NO2– coordinates with either
of the two metals at the expense of breaking one or two coordination
bonds. For the oxidation of NO2–, it
is important for NO2– to enter into the
coordination sphere. Subsequently, the metal octahedral coordination
structure and bisterpyridine ligation are attained after the oxidation.
Many of the previous works based on metal SMPs proposed a process
of insertion of analytes into the complex for subsequent oxidation/reduction
via breaking of the already existing metal–ligand bond or a
complete loss of ligand.[10,14,25] In our current work, we have computationally simulated TSs for the
reaction of NO2– ion with the preoptimized
bimetallic complexes, namely, Ni(II)LCo(II) and Ni(II)LCo(III), using
the nonlinear least-squares (NLLSQ) method. TS searches were performed
for the close placement of the NO2– ion
at Ni(II), Co(II), and Co(III) centers separately in Ni(II)LCo(II)
and Ni(II)LCo(III) systems. The imaginary frequency (cm–1) system was determined as the TS from the TS optimization process.
Based on this, the following TSs were obtained from the simulations:TS for placing NO2– close to the Co(II) center of Ni(II)LCo(II):
The resultant
TS loses a coordination site, while the NO2– ion enters, and coordinates with the Co(II) center keeping the octahedron
arrangement unaltered. The vibration around the center (animation)
is shown in Video S1.TS for placing NO2– close to the Ni(II) center of Ni(II)LCo(II): The TS
loses a pyridinecoordination for incorporating the NO2– ion with the metal empty site. The vibration
around the center for such TS tends to result in the NO coordinated
with the Ni(II) metal. The animation of how the N=O bond forms in the NO2– ion is shown in Video S2.TS for placing
NO2– close to the Co(III) center of Ni(II)LCo(III):
The
coordination of the NO2– ion with the
Co(III) center tends to break two coordination bonds between the Co(III)
and two pyridine rings of the terpyridine moiety. The second pyridine
ring tends to break only after the formation of a new coordination
bond with Co(III) as shown in Video S3.TS for placing NO2– close to the Ni(II) center of Ni(II)LCo(III):
From
the TS analysis, it seems that in this case the NO2– ion tends to break down after coordinating with the
metal center and also two coordination bonds with the pyridine rings
get broken. The TS is shown in Video S4.From our analysis of the indirect
and direct ET processes
to the metal center, it becomes certain that both pathways can occur.
Based on the analysis of total energy changes of all of the systems,
it is likely that the NO2– species first
attacked a metal center for a direct ET, while the NO2 species
generated underwent an indirect ET via the MLCT and LLCT pathway (Figure ). Oxidation of NO2– might happen via either the following
pathways:
Figure 5
ERM pathway of NO2– oxidation in terms
of energy value changes for different systems. All energy values were
determined from the optimized systems. The numbers indicate different
systems. The energy value of the (1) Ni(II)LCo(II) system, (2) Ni(II)LCo(III)
system, (3a) Ni(II)LCo(II)_NO2– system,
(3b) Ni(II)LCo(III)_NO2– system, (4a)
TS when NO2– is close to the Ni(II) center
of the Ni(II)LCo(II) system, (4b) TS when NO2– is close to the Co(II) center of the Ni(II)LCo(II) system, (4c)
TS when NO2– is close to the Co(III)
center of the Ni(II)LCo(III) system, (4d) TS when NO2– is close to the Ni(II) center of the Ni(II)LCo(III)
system, (5a) Ni(II)LCo(II)_NO2 system, (5b) Ni(II)LCo(III)_NO2 system, (6a) Ni(II)LCo(III)_ NO2_ H2O system, (6b) Ni(II)LCo(II)_ NO2_ H2O system,
and (7) Ni(II)LCo(III)_ NO3–_ 2H+ system.
ERM pathway of NO2– oxidation in terms
of energy value changes for different systems. All energy values were
determined from the optimized systems. The numbers indicate different
systems. The energy value of the (1) Ni(II)LCo(II) system, (2) Ni(II)LCo(III)
system, (3a) Ni(II)LCo(II)_NO2– system,
(3b) Ni(II)LCo(III)_NO2– system, (4a)
TS when NO2– is close to the Ni(II) center
of the Ni(II)LCo(II) system, (4b) TS when NO2– is close to the Co(II) center of the Ni(II)LCo(II) system, (4c)
TS when NO2– is close to the Co(III)
center of the Ni(II)LCo(III) system, (4d) TS when NO2– is close to the Ni(II) center of the Ni(II)LCo(III)
system, (5a) Ni(II)LCo(II)_NO2 system, (5b) Ni(II)LCo(III)_NO2 system, (6a) Ni(II)LCo(III)_ NO2_ H2O system, (6b) Ni(II)LCo(II)_ NO2_ H2O system,
and (7) Ni(II)LCo(III)_ NO3–_ 2H+ system.ERM pathway 1: (1) →
(3b) → (4a,b) → (5a)
→ (6b) → 7ERM pathway 2: (1) → (2) →
(3a) → (4c,d) →
(5a,b) → (6a,b) → 7The ERM pathway 2 is likely
to be followed when the Co2+ of the Ni(II)LCo(II) system
becomes oxidized to Co3+,
forming the Ni(II)LCo(III) system at high positive potential. On the
other hand, the ERM pathway 1 is the likely pathway when NO2– coordinates with the Ni(II)LCo(II) system during
the first electron transfer. In both cases, the first e– transfer takes place through a TS formation. In these cases, the
NO2– species coordinates with either
of the Ni(II), Co(II), or Co(III)metal centers. While coordinating
with the metal centers, the metal loses at least one of its coordination
sites with the ligand. This is illustrated in Figure . From Figure , it becomes clear that the TSs have the least negative
energy values of all of the systems. The least negative energy value
of these systems further confirms their role as the TS besides the
imaginary frequency assignments. However, the most negative energy
value of the product shows that the proposed reaction pathway is energetically
favorable. Hence, our analyses of the HOMO–LUMO distribution,
UV/vis spectra, charge distribution, and energy value changes of the
optimized systems confirm that the ERM for NO2– oxidation follows either ERM pathway 1 or 2. The two cycles in Figure show the most possible
ET pathway for the NO2– and NO2 species at the polyNiCo HMSMP interface.
Figure 6
Schematic illustration
for the possible catalytic nitrite oxidation
mechanism at the polyNiCo interface. Here, cycle 1 and cycle 2 indicate
the possible catalytic pathway at Ni(II)LCo(II) and Ni(II)LCo(III),
respectively, for the nonenzymatic oxidation of nitrite.
Schematic illustration
for the possible catalytic nitrite oxidation
mechanism at the polyNiCo interface. Here, cycle 1 and cycle 2 indicate
the possible catalytic pathway at Ni(II)LCo(II) and Ni(II)LCo(III),
respectively, for the nonenzymatic oxidation of nitrite.
Conclusions
In this
work, we showed that it is possible to predict the electrocatalytic
reaction mechanism (ERM) of heterometallo-supramolecular polymers
(HMSMPs) using semiempirical quantum chemistry (SEQC) computational
simulation (CS) methods. We optimized the geometry of the repeating
unit (RU) using the AM1* parameterization and simulated its UV/vis
spectra using the ZINDO Hamiltonian. Later on, we simulated the interactions
between the RU and nitrite species using the same methods. This allowed
us to predict the ERM of polyNiCo HMSMP during the oxidation of nitrite.
Our analysis from CS matched the one that we previously anticipated
from experimental analysis of electrochemical data. However, the CSs
allowed us to understand the physicochemical phenomena at the HMSMP
electrode interface during the ERM for nitrite oxidation at the molecular
level with greater clarity. The transition state (TS) analysis from
the CS showed that the NO2– species first
coordinated with either of the metal centers to initiate the electron
transfer process for the oxidation. The TS analysis also showed that
both the type of metals and oxidation states of these metal centers
profoundly influenced how the NO2– species
coordinated with them. Again, analysis of the UV/vis spectra, HOMO–LUMO,
and energy of the RU–nitrite species systems after the simulation
showed that the second electron transfer process likely took place
through LLCT and MLCT pathway. Through combining the analysis of the
CS results, we have proposed the most likely pathway for the ERM of
nitrite oxidation at the polyNiCo HMSMP. This work shows that it is
possible to predict the ERM of SMPs or HMSMPs with various types of
analytes using SEQC methods. Such simulations can be used to predict
the electrocatalytic activity of SMPs and help in designing these
SMPs for higher electrocatalytic activity without the hassles of trial-and-error
methods.
Computational Simulation Methodology
Molecular properties of the polyNiCo material were investigated
by taking a repeating unit (RU) of the polymer. The RU was drawn using
the three-dimensional (3D) atomistic document feature of Materials
Studio 2017 software. Geometry optimization, thermodynamic properties
of the optimized structures, and spectroscopic properties of the RU
were investigated using semiempirical quantum chemistry methods (SEQCMs).
The geometry optimization process, transition state (TS) optimization,
and thermodynamic properties’ calculations were carried out
with the neglect of diatomic differential overlap (NDDO) Hamiltonian,
while the spectroscopic properties were investigated with Zerner’s
intermediate neglect of differential overlap (ZINDO) Hamiltonian.[18,20] The two Hamiltonians were used because while the NDDO Hamiltonian
is better suited for the geometry optimization process and thermodynamic
properties’ evaluation, the ZINDO Hamiltonian is parameterized
for more accurate calculations of spectroscopic properties.[18,21] The geometry optimization and thermodynamic properties’ calculations
of all of the molecular systems were carried out with the AM1* NDDO
Hamiltonian, the spin multiplicity was allowed to be determined during
the calculations, and the unrestricted Hartree–Fock (UHF) spin
state was assigned. The AM1* Hamiltonian was used because it contains
upgraded optimization parameters for the Ni and Co species over its
previous version of AM1 Hamiltonian, and the UHF spin state was assigned
since it improves the geometry optimization accuracy for coordination
complexes.[18] The Hessian calculation was
set for Exact, i.e., the Hessian matrix was calculated during the
optimization process. The TS optimization process was carried out
with the same parameters as those used for the geometry optimization
process. The nonlinear least-squares (NLLSQ) method was used for searching
the TS with gradient norm being set to 0.1 kcal/(mol Å).For spectroscopic properties’ calculations, the intermediate
neglect of differential overlap (INDO/2) parameter of the ZINDO Hamiltonian
was utilized. The restricted open-shell Hartree–Fock (ROHF)
spin state was assigned, with spin multiplicity being set to auto-determination.The electronic properties were calculated by setting the self-consistent
field (SCF) tolerance to 5e–7 eV/atom, with max
cycles of 1000. The SCF convergence scheme from Badziag and Solm was
used (IIS) since it gives the most reliable convergence. For the study
of spectroscopic properties, the configuration iteration (CI) type
was set to RumerCI. The spectroscopic properties of all of the optimized
species were studied using these parameters.The frequency analysis
allowed the calculations of the IR vibrational
spectra for the individual molecular systems. The studies of spectroscopic
properties permitted the UV/vis spectrum plotting with contribution
from the frontier molecular orbitals (HOMO–LUMO).To
study the effects of potential change on the polyNiCo_GCE, the
RU was optimized with different charges on the Co and Ni atoms in
the complex. The electrocatalytic reactions take place in the electrochemical
double layer (EDL) region. The inner Helmholtz plane (IHP) molecules
at the interfacial region are most likely to take part in the electron
transfer (ET) process. The IHP is usually one molecule thick in length.
However, the outer Helmholtz plane or diffused plane molecules can
also reach the surface of the electrode and take part in the ET process.
That is why the interactions during the nitrite oxidation were studied
by placing the nitrite species at seven different positions (3–7
Å) around the RU. In all systems, during energy evaluation, a
water-based solvation scheme was used using the self-consistent reaction
field (SCRF) method since the experiments were carried out in aqueous
medium. The full reaction pathway was determined through optimizing
the simulation models that contained the RU and the nitrite species
along with individual water and nitrogen dioxide (NO2)
molecules.