| Literature DB >> 32547850 |
Christoph Reisch1, Stefanie Meier1, Christoph Schmid1, Maik Bartelheimer2.
Abstract
In this study we analysed the impact of water regime and soil nutrients on the clonal diversity and genetic variation of the sedge Carex nigra in a central alpine fen. For our analysis, we established 16 study plots randomly distributed over the fen. We determined the exact elevation of each plot as an indicator for the water regime and measured the content of phosphorous and potassium in the soil of each plot. Clonal diversity and genetic variation of C. nigra were assessed with nuclear microsatellites using leaf material collected in 20 subplots along a diagonal cross within each study plot. The influence of water regime and soil mineral nutrients on clonal diversity and genetic variation was estimated by Bayesian multiple regression. Our study revealed a clear impact of soil nutrient conditions on clonal diversity and genetic variation of C. nigra, which increased with the concentration of phosphorous and decreased with the concentration of potassium. Key background to these findings seems to be the relative offspring success from generative as compared to clonal propagation. Phosphorous acquisition is essential during seedling establishment. Clonal diversity and genetic variation increase, therefore, at sites with higher phosphorous contents due to more successful recruitment. High levels of clonal diversity and genetic variation at sites of low potassium availability may in contrast be mainly caused by increased plant susceptibility to abiotic stress under conditions of potassium deficiency, which brings about more gaps in C. nigra stands and favors the ingrowth from other clones or recruitment from seeds. ©2020 Reisch et al.Entities:
Keywords: Carex nigra; Clonality; High alpine fen; Microsatellites; Soil nutrients
Year: 2020 PMID: 32547850 PMCID: PMC7275680 DOI: 10.7717/peerj.8887
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Geographic position of the 16 study plots in the high-alpine fen “Hohes Moos” in the Valley of Stubai near Greitspitze (Austria).
The elevational position of the study plots is given in Table 1.
Study plots with their number (Pl.) and elevation (El.) in m above sea level, content of P and K in mg per kg soil, total number of Carex nigra shoots (Ss), number of flowering shoots (Sf) and the clonal diversity and genetic variation of the species in the plots measured as number of clones (G), clonal diversity (R), number of alleles (Na), effective number of alleles (Ne), observed heterozygosity (Ho), expected heterozygosity (He) and Fixation index (F).
| 01 | 2299.6 | 11.4 | 756.8 | 565 | 35 | 2 | 0.05 | 2.20 | 1.20 | 0.05 | 0.14 | 0.69 |
| 02 | 2299.9 | 16.6 | 769.1 | 815 | 39 | 1 | 0.00 | 1.80 | 1.29 | 0.00 | 0.13 | 1.00 |
| 03 | 2299.4 | 5.8 | 690.6 | 730 | 31 | 3 | 0.11 | 2.20 | 1.50 | 0.18 | 0.29 | 0.55 |
| 04 | 2299.8 | 15.3 | 1007.2 | 850 | 55 | 3 | 0.11 | 1.80 | 1.45 | 0.11 | 0.26 | 0.54 |
| 05 | 2299.7 | 16.3 | 646.6 | 510 | 16 | 8 | 0.37 | 3.00 | 1.86 | 0.24 | 0.37 | 0.48 |
| 06 | 2300.1 | 41.5 | 1357.1 | 610 | 6 | 3 | 0.11 | 2.40 | 1.59 | 0.18 | 0.34 | 0.59 |
| 07 | 2300.1 | 13.5 | 823.4 | 585 | 2 | 3 | 0.11 | 2.80 | 1.72 | 0.01 | 0.34 | 0.98 |
| 08 | 2299.6 | 29.3 | 2441.3 | 505 | 30 | 1 | 0.00 | 1.40 | 1.07 | 0.00 | 0.05 | 1.00 |
| 09 | 2300.1 | 88.8 | 1637.4 | 345 | 1 | 6 | 0.26 | 2.60 | 1.88 | 0.27 | 0.38 | 0.43 |
| 10 | 2299.6 | 37.0 | 958.4 | 430 | 90 | 2 | 0.05 | 2.20 | 1.51 | 0.01 | 0.29 | 0.97 |
| 11 | 2300.1 | 49.0 | 1431.7 | 320 | 9 | 2 | 0.05 | 2.20 | 1.48 | 0.20 | 0.28 | 0.36 |
| 12 | 2300.1 | 24.6 | 751.0 | 535 | 30 | 4 | 0.16 | 2.40 | 2.12 | 0.23 | 0.44 | 0.53 |
| 13 | 2300.0 | 30.8 | 1000.1 | 395 | 41 | 3 | 0.11 | 2.20 | 1.48 | 0.05 | 0.26 | 0.83 |
| 14 | 2299.4 | 11.3 | 940.2 | 230 | 4 | 3 | 0.11 | 2.00 | 1.27 | 0.06 | 0.18 | 0.56 |
| 15 | 2299.6 | 10.4 | 826.1 | 225 | 1 | 3 | 0.11 | 2.00 | 1.54 | 0.17 | 0.23 | 0.25 |
| 16 | 2299.4 | 19.7 | 908.0 | 260 | 34 | 1 | 0.00 | 1.40 | 1.33 | 0.00 | 0.18 | 1.00 |
Credible results of the Bayesian multiple regressions on clonal diversity and genetic variation within the study plots.
The most probable values (MPV) are given together with the effective sample size (ESS) of all parameters. A 90% highest density interval (HDI) was computed for each model parameter (HDIL and HDIU: lower and upper limits of the interval). PDist is the percentage of the posterior distribution that is larger than zero. A credible impact of soil nutrients on clonal diversity and genetic variation is indicated by superscript a and a trend for the impact is indicated by superscript b.
| Intercept | −0.05 | 18695 | −0.45 | 0.35 | 41.95 | |
| elevation | −0.09 | 16379 | −0.61 | 0.38 | 37.08 | |
| scale | 0.82 | 13583 | 0.48 | 1.29 | – | |
| normality | 5.84 | 10650 | 1.00 | 65.06 | – | |
| Intercept | 0.02 | 19346 | −0.39 | 0.40 | 49.27 | |
| elevation | 0.08 | 16593 | −0.45 | 0.53 | 59.20 | |
| scale | 0.82 | 15251 | 0.57 | 1.27 | – | |
| normality | 9.65 | 14804 | 1.15 | 72.61 | – | |
| Intercept | −0.01 | 20000 | −0.35 | 0.32 | 49.15 | |
| elevation | 0.17 | 16502 | −0.23 | 0.60 | 76.65 | |
| scale | 0.70 | 15852 | 0.48 | 1.06 | – | |
| normality | 10.81 | 15217 | 1.15 | 73.33 | – | |
| Intercept | 0.03 | 20709 | −0.30 | 0.34 | 57.27 | |
| elevation | 0.15 | 16758 | −0.23 | 0.54 | 74.03 | |
| scale | 0.64 | 14676 | 0.42 | 1.03 | – | |
| normality | 7.26 | 12429 | 1.00 | 68.16 | – |
Figure 2Relationship between (detrended) clonal diversity and phosphorous/potassium in the soil displayed as two-dimensional scatter plots based upon the results of the hierarchical Bayesian multiple regression.
Dashed lines represent twenty randomly chosen steps.
Different ecophysiological implications related to the plant mineral nutrients phosphorus and potassium.
| very low | usually low, but high in organic soils | ||
| high | uptake can be improved by mycorrhiza. The ecological importance of this is yet unclear, but likely minor to the case of phosphorus. | ||
| high (90%) | relatively high (70%), but prior losses due to leaching can be very substantial. | ||
| stunted growth, reduced leave expansion, impeded flowering / fruiting. | increased susceptibility to abiotic stress like cold stress, hypoxya, anoxya. Effects on cell size, but little effects on plant size. |