Literature DB >> 32542832

Combining Qdot Nanotechnology and DNA Nanotechnology for Sensitive Single-Cell Imaging.

Wen Zhou1, Yan Han1, Brian J Beliveau2, Xiaohu Gao1.   

Abstract

Immunohistochemistry (IHC) can provide detailed information about protein expression within the cell microenvironment and is one of the most common techniques in biology and medicine due to the broad availability of highly specific antibodies and well-established bioconjugation methods for modification of these antibodies with chromogens and fluorophores. Despite recent advances in this field, it remains challenging to simultaneously achieve high multiplexing, sensitivity, and throughput in single-cell profiling experiments. Here, the combination of two powerful technologies is reported, quantum dot and signal amplification by exchange reaction (QD-SABER), for sensitive and multiplexed imaging of endogenous proteins. Compared to the conventional IHC process using dye-labeled secondary antibodies (which already has a built-in signal amplification mechanism), QD-SABER provides an additional 7.6-fold signal amplification. In addition, the DNA hybridization-based IHC can be rapidly removed to regenerate the sample for subsequent cycles of immunostaining (>10 cycles), greatly expanding the multiplexing capability.
© 2020 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA nanotechnology; imaging; multiplexing; quantum dots; single cells

Year:  2020        PMID: 32542832      PMCID: PMC7669682          DOI: 10.1002/adma.201908410

Source DB:  PubMed          Journal:  Adv Mater        ISSN: 0935-9648            Impact factor:   30.849


  39 in total

1.  Quantum dots for molecular pathology: their time has arrived.

Authors:  Lawrence D True; Xiaohu Gao
Journal:  J Mol Diagn       Date:  2007-02       Impact factor: 5.568

2.  Dynamics and Spatial Genomics of the Nascent Transcriptome by Intron seqFISH.

Authors:  Sheel Shah; Yodai Takei; Wen Zhou; Eric Lubeck; Jina Yun; Chee-Huat Linus Eng; Noushin Koulena; Christopher Cronin; Christoph Karp; Eric J Liaw; Mina Amin; Long Cai
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

3.  Rapid and Multiplexed MicroRNA Diagnostic Assay Using Quantum Dot-Based Förster Resonance Energy Transfer.

Authors:  Xue Qiu; Niko Hildebrandt
Journal:  ACS Nano       Date:  2015-07-24       Impact factor: 15.881

4.  Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.

Authors:  Charlotte Giesen; Hao A O Wang; Denis Schapiro; Nevena Zivanovic; Andrea Jacobs; Bodo Hattendorf; Peter J Schüffler; Daniel Grolimund; Joachim M Buhmann; Simone Brandt; Zsuzsanna Varga; Peter J Wild; Detlef Günther; Bernd Bodenmiller
Journal:  Nat Methods       Date:  2014-03-02       Impact factor: 28.547

5.  In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus.

Authors:  Sheel Shah; Eric Lubeck; Wen Zhou; Long Cai
Journal:  Neuron       Date:  2016-10-19       Impact factor: 17.173

Review 6.  Nucleic-Acid Structures as Intracellular Probes for Live Cells.

Authors:  Devleena Samanta; Sasha B Ebrahimi; Chad A Mirkin
Journal:  Adv Mater       Date:  2019-07-04       Impact factor: 30.849

7.  A DNA-based fluorescent reporter maps HOCl production in the maturing phagosome.

Authors:  Shareefa Thekkan; Maulik S Jani; Chang Cui; Krishna Dan; Guolin Zhou; Lev Becker; Yamuna Krishnan
Journal:  Nat Chem Biol       Date:  2018-12-10       Impact factor: 15.040

8.  Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells.

Authors:  Mridusmita Saikia; Philip Burnham; Sara H Keshavjee; Michael F Z Wang; Michael Heyang; Pablo Moral-Lopez; Meleana M Hinchman; Charles G Danko; John S L Parker; Iwijn De Vlaminck
Journal:  Nat Methods       Date:  2018-12-17       Impact factor: 28.547

9.  Quantum dot imaging platform for single-cell molecular profiling.

Authors:  Pavel Zrazhevskiy; Xiaohu Gao
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging.

Authors:  Yury Goltsev; Nikolay Samusik; Julia Kennedy-Darling; Salil Bhate; Matthew Hale; Gustavo Vazquez; Sarah Black; Garry P Nolan
Journal:  Cell       Date:  2018-08-02       Impact factor: 41.582

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  3 in total

Review 1.  CODEX multiplexed tissue imaging with DNA-conjugated antibodies.

Authors:  Sarah Black; Darci Phillips; John W Hickey; Julia Kennedy-Darling; Vishal G Venkataraaman; Nikolay Samusik; Yury Goltsev; Christian M Schürch; Garry P Nolan
Journal:  Nat Protoc       Date:  2021-07-02       Impact factor: 13.491

2.  Cellular macromolecules-tethered DNA walking indexing to explore nanoenvironments of chromatin modifications.

Authors:  Feng Chen; Min Bai; Xiaowen Cao; Jing Xue; Yue Zhao; Na Wu; Lei Wang; Dexin Zhang; Yongxi Zhao
Journal:  Nat Commun       Date:  2021-03-30       Impact factor: 14.919

Review 3.  Preparation, applications, and challenges of functional DNA nanomaterials.

Authors:  Lei Zhang; Mengge Chu; Cailing Ji; Jie Tan; Quan Yuan
Journal:  Nano Res       Date:  2022-08-31       Impact factor: 10.269

  3 in total

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