Literature DB >> 24584193

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.

Charlotte Giesen1, Hao A O Wang2, Denis Schapiro3, Nevena Zivanovic4, Andrea Jacobs5, Bodo Hattendorf6, Peter J Schüffler7, Daniel Grolimund8, Joachim M Buhmann7, Simone Brandt9, Zsuzsanna Varga9, Peter J Wild9, Detlef Günther6, Bernd Bodenmiller5.   

Abstract

Mass cytometry enables high-dimensional, single-cell analysis of cell type and state. In mass cytometry, rare earth metals are used as reporters on antibodies. Analysis of metal abundances using the mass cytometer allows determination of marker expression in individual cells. Mass cytometry has previously been applied only to cell suspensions. To gain spatial information, we have coupled immunohistochemical and immunocytochemical methods with high-resolution laser ablation to CyTOF mass cytometry. This approach enables the simultaneous imaging of 32 proteins and protein modifications at subcellular resolution; with the availability of additional isotopes, measurement of over 100 markers will be possible. We applied imaging mass cytometry to human breast cancer samples, allowing delineation of cell subpopulations and cell-cell interactions and highlighting tumor heterogeneity. Imaging mass cytometry complements existing imaging approaches. It will enable basic studies of tissue heterogeneity and function and support the transition of medicine toward individualized molecularly targeted diagnosis and therapies.

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Year:  2014        PMID: 24584193     DOI: 10.1038/nmeth.2869

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  40 in total

1.  Analyzing proteome topology and function by automated multidimensional fluorescence microscopy.

Authors:  Walter Schubert; Bernd Bonnekoh; Ansgar J Pommer; Lars Philipsen; Raik Böckelmann; Yanina Malykh; Harald Gollnick; Manuela Friedenberger; Marcus Bode; Andreas W M Dress
Journal:  Nat Biotechnol       Date:  2006-10-01       Impact factor: 54.908

2.  Bioimaging of metals and biomolecules in mouse heart by laser ablation inductively coupled plasma mass spectrometry and secondary ion mass spectrometry.

Authors:  J Sabine Becker; Uwe Breuer; Hui-Fang Hsieh; Tobias Osterholt; Usarat Kumtabtim; Bei Wu; Andreas Matusch; Joseph A Caruso; Zhenyu Qin
Journal:  Anal Chem       Date:  2010-10-26       Impact factor: 6.986

3.  Fast chemical imaging at high spatial resolution by laser ablation inductively coupled plasma mass spectrometry.

Authors:  Hao A O Wang; Daniel Grolimund; Charlotte Giesen; Camelia N Borca; James R H Shaw-Stewart; Bernd Bodenmiller; Detlef Günther
Journal:  Anal Chem       Date:  2013-09-17       Impact factor: 6.986

4.  Review of the state-of-the-art of laser ablation inductively coupled plasma mass spectrometry.

Authors:  Joachim Koch; Detlef Günther
Journal:  Appl Spectrosc       Date:  2011-05       Impact factor: 2.388

5.  Human breast cancer cells generated by oncogenic transformation of primary mammary epithelial cells.

Authors:  B Elenbaas; L Spirio; F Koerner; M D Fleming; D B Zimonjic; J L Donaher; N C Popescu; W C Hahn; R A Weinberg
Journal:  Genes Dev       Date:  2001-01-01       Impact factor: 11.361

Review 6.  Intra-tumour heterogeneity: a looking glass for cancer?

Authors:  Andriy Marusyk; Vanessa Almendro; Kornelia Polyak
Journal:  Nat Rev Cancer       Date:  2012-04-19       Impact factor: 60.716

7.  Seven-color fluorescence imaging of tissue samples based on Fourier spectroscopy and singular value decomposition.

Authors:  H Tsurui; H Nishimura; S Hattori; S Hirose; K Okumura; T Shirai
Journal:  J Histochem Cytochem       Date:  2000-05       Impact factor: 2.479

8.  Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue.

Authors:  Michael J Gerdes; Christopher J Sevinsky; Anup Sood; Sudeshna Adak; Musodiq O Bello; Alexander Bordwell; Ali Can; Alex Corwin; Sean Dinn; Robert J Filkins; Denise Hollman; Vidya Kamath; Sireesha Kaanumalle; Kevin Kenny; Melinda Larsen; Michael Lazare; Qing Li; Christina Lowes; Colin C McCulloch; Elizabeth McDonough; Michael C Montalto; Zhengyu Pang; Jens Rittscher; Alberto Santamaria-Pang; Brion D Sarachan; Maximilian L Seel; Antti Seppo; Kashan Shaikh; Yunxia Sui; Jingyu Zhang; Fiona Ginty
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-01       Impact factor: 11.205

9.  NY-BR-1 protein expression in breast carcinoma: a mammary gland differentiation antigen as target for cancer immunotherapy.

Authors:  Jean-Philippe Theurillat; Ursina Zürrer-Härdi; Zsuzsanna Varga; Martina Storz; Nicole M Probst-Hensch; Burkhardt Seifert; Mathias K Fehr; Daniel Fink; Soldano Ferrone; Bernhard Pestalozzi; Achim A Jungbluth; Yao-Tseng Chen; Dirk Jäger; Alexander Knuth; Holger Moch
Journal:  Cancer Immunol Immunother       Date:  2007-04-05       Impact factor: 6.968

10.  Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE.

Authors:  Peng Qiu; Erin F Simonds; Sean C Bendall; Kenneth D Gibbs; Robert V Bruggner; Michael D Linderman; Karen Sachs; Garry P Nolan; Sylvia K Plevritis
Journal:  Nat Biotechnol       Date:  2011-10-02       Impact factor: 54.908

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  476 in total

Review 1.  Flow Cytometry II: Mass and Imaging Cytometry.

Authors:  Hung Doan; Garrett M Chinn; Richard R Jahan-Tigh
Journal:  J Invest Dermatol       Date:  2015-09       Impact factor: 8.551

2.  Analytical challenges of shotgun lipidomics at different resolution of measurements.

Authors:  Jianing Wang; Xianlin Han
Journal:  Trends Analyt Chem       Date:  2019-10-17       Impact factor: 12.296

Review 3.  Chimeric Antigen Receptor T Cell Therapy: Challenges to Bench-to-Bedside Efficacy.

Authors:  Shivani Srivastava; Stanley R Riddell
Journal:  J Immunol       Date:  2018-01-15       Impact factor: 5.422

4.  Opposing Roles of Dendritic Cell Subsets in Experimental GN.

Authors:  Sebastian Brähler; Bernd H Zinselmeyer; Saravanan Raju; Maximilian Nitschke; Hani Suleiman; Brian T Saunders; Michael W Johnson; Alexander M C Böhner; Susanne F Viehmann; Derek J Theisen; Nicole M Kretzer; Carlos G Briseño; Konstantin Zaitsev; Olga Ornatsky; Qing Chang; Javier A Carrero; Jeffrey B Kopp; Maxim N Artyomov; Christian Kurts; Kenneth M Murphy; Jeffrey H Miner; Andrey S Shaw
Journal:  J Am Soc Nephrol       Date:  2017-12-07       Impact factor: 10.121

5.  3D material cytometry (3DMaC): a very high-replicate, high-throughput analytical method using microfabricated, shape-specific, cell-material niches.

Authors:  Kirsten Parratt; Jenny Jeong; Peng Qiu; Krishnendu Roy
Journal:  Lab Chip       Date:  2017-08-08       Impact factor: 6.799

Review 6.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

7.  Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins.

Authors:  Thanh D Do; Joseph F Ellis; Elizabeth K Neumann; Troy J Comi; Emily G Tillmaand; Ashley E Lenhart; Stanislav S Rubakhin; Jonathan V Sweedler
Journal:  Chemphyschem       Date:  2018-04-17       Impact factor: 3.102

8.  Smooth Muscle Cell Reprogramming in Aortic Aneurysms.

Authors:  Pei-Yu Chen; Lingfeng Qin; Guangxin Li; Jose Malagon-Lopez; Zheng Wang; Sonia Bergaya; Sharvari Gujja; Alexander W Caulk; Sae-Il Murtada; Xinbo Zhang; Zhen W Zhuang; Deepak A Rao; Guilin Wang; Zuzana Tobiasova; Bo Jiang; Ruth R Montgomery; Lele Sun; Hongye Sun; Edward A Fisher; Jeffrey R Gulcher; Carlos Fernandez-Hernando; Jay D Humphrey; George Tellides; Thomas W Chittenden; Michael Simons
Journal:  Cell Stem Cell       Date:  2020-04-02       Impact factor: 24.633

Review 9.  Biophysical technologies for understanding circulating tumor cell biology and metastasis.

Authors:  Derrick W Su; Jorge Nieva
Journal:  Transl Lung Cancer Res       Date:  2017-08

10.  SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks.

Authors:  Erik A Burlingame; Adam A Margolin; Joe W Gray; Young Hwan Chang
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03-06
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