Literature DB >> 32534791

In The Blood: Connecting Variant to Function In Human Hematopoiesis.

Satish K Nandakumar1, Xiaotian Liao1, Vijay G Sankaran2.   

Abstract

Genome-wide association studies (GWAS) have identified thousands of genetic variants associated with a range of human diseases and traits. However, understanding the mechanisms by which these genetic variants have an impact on associated diseases and traits, often referred to as the variant-to-function (V2F) problem, remains a significant hurdle. Solving the V2F challenge requires us to identify causative genetic variants, relevant cell types/states, target genes, and mechanisms by which variants can cause diseases or alter phenotypic traits. We discuss emerging functional approaches that are being applied to tackle the V2F problem for blood cell traits, illuminating how human genetic variation can impact on key mechanisms in hematopoiesis, as well as highlighting future prospects for this nascent field.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  GWAS; blood cell traits; hematopoiesis; variant to function

Mesh:

Year:  2020        PMID: 32534791      PMCID: PMC7363574          DOI: 10.1016/j.tig.2020.05.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  86 in total

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Journal:  Bioinformatics       Date:  2016-01-14       Impact factor: 6.937

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4.  From GWAS variant to function: A study of ∼148,000 variants for blood cell traits.

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