Literature DB >> 32534126

Machine-learning-based diagnostics of EEG pathology.

Lukas A W Gemein1, Robin T Schirrmeister2, Patryk Chrabąszcz2, Daniel Wilson3, Joschka Boedecker4, Andreas Schulze-Bonhage5, Frank Hutter6, Tonio Ball7.   

Abstract

Machine learning (ML) methods have the potential to automate clinical EEG analysis. They can be categorized into feature-based (with handcrafted features), and end-to-end approaches (with learned features). Previous studies on EEG pathology decoding have typically analyzed a limited number of features, decoders, or both. For a I) more elaborate feature-based EEG analysis, and II) in-depth comparisons of both approaches, here we first develop a comprehensive feature-based framework, and then compare this framework to state-of-the-art end-to-end methods. To this aim, we apply the proposed feature-based framework and deep neural networks including an EEG-optimized temporal convolutional network (TCN) to the task of pathological versus non-pathological EEG classification. For a robust comparison, we chose the Temple University Hospital (TUH) Abnormal EEG Corpus (v2.0.0), which contains approximately 3000 EEG recordings. The results demonstrate that the proposed feature-based decoding framework can achieve accuracies on the same level as state-of-the-art deep neural networks. We find accuracies across both approaches in an astonishingly narrow range from 81 to 86%. Moreover, visualizations and analyses indicated that both approaches used similar aspects of the data, e.g., delta and theta band power at temporal electrode locations. We argue that the accuracies of current binary EEG pathology decoders could saturate near 90% due to the imperfect inter-rater agreement of the clinical labels, and that such decoders are already clinically useful, such as in areas where clinical EEG experts are rare. We make the proposed feature-based framework available open source and thus offer a new tool for EEG machine learning research.
Copyright © 2020. Published by Elsevier Inc.

Keywords:  Convolutional neural networks; Deep learning; Diagnostics; EEG; Electroencephalography; Features; Machine learning; Pathology; Riemannian geometry

Year:  2020        PMID: 32534126     DOI: 10.1016/j.neuroimage.2020.117021

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  12 in total

1.  Combining magnetoencephalography with magnetic resonance imaging enhances learning of surrogate-biomarkers.

Authors:  Denis A Engemann; Oleh Kozynets; David Sabbagh; Guillaume Lemaître; Gael Varoquaux; Franziskus Liem; Alexandre Gramfort
Journal:  Elife       Date:  2020-05-19       Impact factor: 8.140

2.  A Brief History of Machine Learning in Neurosurgery.

Authors:  Andrew T Schilling; Pavan P Shah; James Feghali; Adrian E Jimenez; Tej D Azad
Journal:  Acta Neurochir Suppl       Date:  2022

3.  Population modeling with machine learning can enhance measures of mental health.

Authors:  Kamalaker Dadi; Gaël Varoquaux; Josselin Houenou; Danilo Bzdok; Bertrand Thirion; Denis Engemann
Journal:  Gigascience       Date:  2021-10-13       Impact factor: 6.524

4.  The two decades brainclinics research archive for insights in neurophysiology (TDBRAIN) database.

Authors:  Hanneke van Dijk; Guido van Wingen; Damiaan Denys; Sebastian Olbrich; Rosalinde van Ruth; Martijn Arns
Journal:  Sci Data       Date:  2022-06-14       Impact factor: 8.501

Review 5.  How Machine Learning is Powering Neuroimaging to Improve Brain Health.

Authors:  Nalini M Singh; Jordan B Harrod; Sandya Subramanian; Mitchell Robinson; Ken Chang; Suheyla Cetin-Karayumak; Adrian Vasile Dalca; Simon Eickhoff; Michael Fox; Loraine Franke; Polina Golland; Daniel Haehn; Juan Eugenio Iglesias; Lauren J O'Donnell; Yangming Ou; Yogesh Rathi; Shan H Siddiqi; Haoqi Sun; M Brandon Westover; Susan Whitfield-Gabrieli; Randy L Gollub
Journal:  Neuroinformatics       Date:  2022-03-28

6.  Automated Adult Epilepsy Diagnostic Tool Based on Interictal Scalp Electroencephalogram Characteristics: A Six-Center Study.

Authors:  John Thomas; Prasanth Thangavel; Wei Yan Peh; Jin Jing; Rajamanickam Yuvaraj; Sydney S Cash; Rima Chaudhari; Sagar Karia; Rahul Rathakrishnan; Vinay Saini; Nilesh Shah; Rohit Srivastava; Yee-Leng Tan; Brandon Westover; Justin Dauwels
Journal:  Int J Neural Syst       Date:  2021-01-12       Impact factor: 6.325

7.  Interpretation of Frequency Channel-Based CNN on Depression Identification.

Authors:  Hengjin Ke; Cang Cai; Fengqin Wang; Fang Hu; Jiawei Tang; Yuxin Shi
Journal:  Front Comput Neurosci       Date:  2021-12-27       Impact factor: 2.380

8.  Interictal EEG and ECG for SUDEP Risk Assessment: A Retrospective Multicenter Cohort Study.

Authors:  Zhe Sage Chen; Aaron Hsieh; Guanghao Sun; Gregory K Bergey; Samuel F Berkovic; Piero Perucca; Wendyl D'Souza; Christopher J Elder; Pue Farooque; Emily L Johnson; Sarah Barnard; Russell Nightscales; Patrick Kwan; Brian Moseley; Terence J O'Brien; Shobi Sivathamboo; Juliana Laze; Daniel Friedman; Orrin Devinsky
Journal:  Front Neurol       Date:  2022-03-18       Impact factor: 4.086

9.  BENDR: Using Transformers and a Contrastive Self-Supervised Learning Task to Learn From Massive Amounts of EEG Data.

Authors:  Demetres Kostas; Stéphane Aroca-Ouellette; Frank Rudzicz
Journal:  Front Hum Neurosci       Date:  2021-06-23       Impact factor: 3.169

10.  The NMT Scalp EEG Dataset: An Open-Source Annotated Dataset of Healthy and Pathological EEG Recordings for Predictive Modeling.

Authors:  Hassan Aqeel Khan; Rahat Ul Ain; Awais Mehmood Kamboh; Hammad Tanveer Butt; Saima Shafait; Wasim Alamgir; Didier Stricker; Faisal Shafait
Journal:  Front Neurosci       Date:  2022-01-05       Impact factor: 4.677

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