Literature DB >> 32528079

Applying genomic resources to accelerate wheat biofortification.

Muhammad Waqas Ali1, Philippa Borrill2.   

Abstract

Wheat has low levels of the micronutrients iron and zinc in the grain, which contributes to 2 billion people suffering from micronutrient deficiency globally. While wheat flour is commonly fortified during processing, an attractive and more sustainable solution is biofortification, which could improve micronutrient content in the human diet, without the sustainability issues and costs associated with conventional fortification. Although many studies have used quantitative trait loci mapping and genome-wide association to identify genetic loci to improve micronutrient contents, recent developments in genomics offer an opportunity to accelerate marker discovery and use gene-focussed approaches to engineer improved micronutrient content in wheat. The recent publication of a high-quality wheat genome sequence, alongside gene expression atlases, variation datasets and sequenced mutant populations, provides a foundation to identify genetic loci and genes controlling micronutrient content in wheat. We discuss how novel genomic resources can identify candidate genes for biofortification, integrating knowledge from other cereal crops, and how these genes can be tested using gene editing, transgenic and TILLING approaches. Finally, we highlight key challenges remaining to develop wheat cultivars with high levels of iron and zinc.

Entities:  

Year:  2020        PMID: 32528079      PMCID: PMC7784878          DOI: 10.1038/s41437-020-0326-8

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  39 in total

1.  Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

Authors:  Raz Avni; Moran Nave; Omer Barad; Kobi Baruch; Sven O Twardziok; Heidrun Gundlach; Iago Hale; Martin Mascher; Manuel Spannagl; Krystalee Wiebe; Katherine W Jordan; Guy Golan; Jasline Deek; Batsheva Ben-Zvi; Gil Ben-Zvi; Axel Himmelbach; Ron P MacLachlan; Andrew G Sharpe; Allan Fritz; Roi Ben-David; Hikmet Budak; Tzion Fahima; Abraham Korol; Justin D Faris; Alvaro Hernandez; Mark A Mikel; Avraham A Levy; Brian Steffenson; Marco Maccaferri; Roberto Tuberosa; Luigi Cattivelli; Primetta Faccioli; Aldo Ceriotti; Khalil Kashkush; Mohammad Pourkheirandish; Takao Komatsuda; Tamar Eilam; Hanan Sela; Amir Sharon; Nir Ohad; Daniel A Chamovitz; Klaus F X Mayer; Nils Stein; Gil Ronen; Zvi Peleg; Curtis J Pozniak; Eduard D Akhunov; Assaf Distelfeld
Journal:  Science       Date:  2017-07-07       Impact factor: 47.728

2.  expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform.

Authors:  Philippa Borrill; Ricardo Ramirez-Gonzalez; Cristobal Uauy
Journal:  Plant Physiol       Date:  2016-02-11       Impact factor: 8.340

3.  Wheat Vacuolar Iron Transporter TaVIT2 Transports Fe and Mn and Is Effective for Biofortification.

Authors:  James M Connorton; Eleanor R Jones; Ildefonso Rodríguez-Ramiro; Susan Fairweather-Tait; Cristobal Uauy; Janneke Balk
Journal:  Plant Physiol       Date:  2017-07-06       Impact factor: 8.005

4.  An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.

Authors:  Bernardo J Clavijo; Luca Venturini; Christian Schudoma; Gonzalo Garcia Accinelli; Gemy Kaithakottil; Jonathan Wright; Philippa Borrill; George Kettleborough; Darren Heavens; Helen Chapman; James Lipscombe; Tom Barker; Fu-Hao Lu; Neil McKenzie; Dina Raats; Ricardo H Ramirez-Gonzalez; Aurore Coince; Ned Peel; Lawrence Percival-Alwyn; Owen Duncan; Josua Trösch; Guotai Yu; Dan M Bolser; Guy Namaati; Arnaud Kerhornou; Manuel Spannagl; Heidrun Gundlach; Georg Haberer; Robert P Davey; Christine Fosker; Federica Di Palma; Andrew L Phillips; A Harvey Millar; Paul J Kersey; Cristobal Uauy; Ksenia V Krasileva; David Swarbreck; Michael W Bevan; Matthew D Clark
Journal:  Genome Res       Date:  2017-05       Impact factor: 9.043

5.  Global trends in dietary micronutrient supplies and estimated prevalence of inadequate intakes.

Authors:  Ty Beal; Eric Massiot; Joanne E Arsenault; Matthew R Smith; Robert J Hijmans
Journal:  PLoS One       Date:  2017-04-11       Impact factor: 3.240

6.  The role of ZIP transporters and group F bZIP transcription factors in the Zn-deficiency response of wheat (Triticum aestivum).

Authors:  Nicholas P Evens; Peter Buchner; Lorraine E Williams; Malcolm J Hawkesford
Journal:  Plant J       Date:  2017-09-17       Impact factor: 6.417

7.  A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization.

Authors:  Abdul Kader Alabdullah; Philippa Borrill; Azahara C Martin; Ricardo H Ramirez-Gonzalez; Keywan Hassani-Pak; Cristobal Uauy; Peter Shaw; Graham Moore
Journal:  Front Plant Sci       Date:  2019-10-18       Impact factor: 5.753

Review 8.  Iron Biofortification of Staple Crops: Lessons and Challenges in Plant Genetics.

Authors:  James M Connorton; Janneke Balk
Journal:  Plant Cell Physiol       Date:  2019-07-01       Impact factor: 4.927

9.  An optimised CRISPR/Cas9 protocol to create targeted mutations in homoeologous genes and an efficient genotyping protocol to identify edited events in wheat.

Authors:  Xiucheng Cui; Margaret Balcerzak; Johann Schernthaner; Vivijan Babic; Raju Datla; Elizabeth K Brauer; Natalie Labbé; Rajagopal Subramaniam; Thérèse Ouellet
Journal:  Plant Methods       Date:  2019-10-24       Impact factor: 4.993

10.  A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat.

Authors:  Nikolai M Adamski; Philippa Borrill; Jemima Brinton; Sophie A Harrington; Clémence Marchal; Alison R Bentley; William D Bovill; Luigi Cattivelli; James Cockram; Bruno Contreras-Moreira; Brett Ford; Sreya Ghosh; Wendy Harwood; Keywan Hassani-Pak; Sadiye Hayta; Lee T Hickey; Kostya Kanyuka; Julie King; Marco Maccaferrri; Guy Naamati; Curtis J Pozniak; Ricardo H Ramirez-Gonzalez; Carolina Sansaloni; Ben Trevaskis; Luzie U Wingen; Brande Bh Wulff; Cristobal Uauy
Journal:  Elife       Date:  2020-03-24       Impact factor: 8.140

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  6 in total

Review 1.  Indian Wheat Genomics Initiative for Harnessing the Potential of Wheat Germplasm Resources for Breeding Disease-Resistant, Nutrient-Dense, and Climate-Resilient Cultivars.

Authors:  Sundeep Kumar; Sherry R Jacob; Reyazul Rouf Mir; V K Vikas; Pawan Kulwal; Tilak Chandra; Satinder Kaur; Uttam Kumar; Suneel Kumar; Shailendra Sharma; Ravinder Singh; Sai Prasad; Anju Mahendru Singh; Amit Kumar Singh; Jyoti Kumari; M S Saharan; Subhash Chander Bhardwaj; Manoj Prasad; Sanjay Kalia; Kuldeep Singh
Journal:  Front Genet       Date:  2022-06-29       Impact factor: 4.772

2.  Organ-specific expression of genes involved in iron homeostasis in wheat mutant lines with increased grain iron and zinc content.

Authors:  Saule Kenzhebayeva; Saule Atabayeva; Fatma Sarsu; Alfiya Abekova; Sabina Shoinbekova; Nargul Omirbekova; Gulina Doktyrbay; Aizhan Beisenova; Yuri Shavrukov
Journal:  PeerJ       Date:  2022-06-10       Impact factor: 3.061

Review 3.  Opinion Exploiting genomics to improve the benefits of wheat: Prospects and limitations.

Authors:  Peter R Shewry; Alison Lovegrove; Luzie U Wingen; Simon Griffiths
Journal:  J Cereal Sci       Date:  2022-05       Impact factor: 4.075

4.  Genomic selection can accelerate the biofortification of spring wheat.

Authors:  Reem Joukhadar; Rebecca Thistlethwaite; Richard M Trethowan; Matthew J Hayden; James Stangoulis; Suong Cu; Hans D Daetwyler
Journal:  Theor Appl Genet       Date:  2021-07-12       Impact factor: 5.699

5.  Theory into practice: opportunities & applications of quantitative genetics in plants.

Authors:  Alison R Bentley; Lindsey J Compton
Journal:  Heredity (Edinb)       Date:  2020-11-09       Impact factor: 3.832

Review 6.  Assessment of Biofortification Approaches Used to Improve Micronutrient-Dense Plants That Are a Sustainable Solution to Combat Hidden Hunger.

Authors:  Esra Koç; Belgizar Karayiğit
Journal:  J Soil Sci Plant Nutr       Date:  2021-11-04
  6 in total

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