Literature DB >> 32516654

Polymer perspective of genome mobilization.

Colleen J Lawrimore1, Josh Lawrimore1, Yunyan He1, Sergio Chavez1, Kerry Bloom2.   

Abstract

Chromosome motion is an intrinsic feature of all DNA-based metabolic processes and is a particularly well-documented response to both DNA damage and repair. By using both biological and polymer physics approaches, many of the contributing factors of chromatin motility have been elucidated. These include the intrinsic properties of chromatin, such as stiffness, as well as the loop modulators condensin and cohesin. Various biological factors such as external tethering to nuclear domains, ATP-dependent processes, and nucleofilaments further impact chromatin motion. DNA damaging agents that induce double-stranded breaks also cause increased chromatin motion that is modulated by recruitment of repair and checkpoint proteins. Approaches that integrate biological experimentation in conjunction with models from polymer physics provide mechanistic insights into the role of chromatin dynamics in biological function. In this review we discuss the polymer models and the effects of both DNA damage and repair on chromatin motion as well as mechanisms that may underlie these effects.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Chromatin motion; Polymer models

Mesh:

Substances:

Year:  2020        PMID: 32516654      PMCID: PMC7721199          DOI: 10.1016/j.mrfmmm.2020.111706

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  154 in total

1.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

2.  GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion.

Authors:  A F Straight; A S Belmont; C C Robinett; A W Murray
Journal:  Curr Biol       Date:  1996-12-01       Impact factor: 10.834

Review 3.  Sources of DNA double-strand breaks and models of recombinational DNA repair.

Authors:  Anuja Mehta; James E Haber
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-08-07       Impact factor: 10.005

4.  Entropy gives rise to topologically associating domains.

Authors:  Paula A Vasquez; Caitlin Hult; David Adalsteinsson; Josh Lawrimore; Mark G Forest; Kerry Bloom
Journal:  Nucleic Acids Res       Date:  2016-06-02       Impact factor: 16.971

5.  53BP1 and the LINC Complex Promote Microtubule-Dependent DSB Mobility and DNA Repair.

Authors:  Francisca Lottersberger; Roos Anna Karssemeijer; Nadya Dimitrova; Titia de Lange
Journal:  Cell       Date:  2015-11-05       Impact factor: 41.582

6.  Self-organization of dynein motors generates meiotic nuclear oscillations.

Authors:  Sven K Vogel; Nenad Pavin; Nicola Maghelli; Frank Jülicher; Iva M Tolić-Nørrelykke
Journal:  PLoS Biol       Date:  2009-04-21       Impact factor: 8.029

7.  Structure and dynamics of interphase chromosomes.

Authors:  Angelo Rosa; Ralf Everaers
Journal:  PLoS Comput Biol       Date:  2008-08-22       Impact factor: 4.475

8.  Compaction and segregation of sister chromatids via active loop extrusion.

Authors:  Anton Goloborodko; Maxim V Imakaev; John F Marko; Leonid Mirny
Journal:  Elife       Date:  2016-05-18       Impact factor: 8.140

9.  Nuclear microtubule filaments mediate non-linear directional motion of chromatin and promote DNA repair.

Authors:  Roxanne Oshidari; Jonathan Strecker; Daniel K C Chung; Karan J Abraham; Janet N Y Chan; Christopher J Damaren; Karim Mekhail
Journal:  Nat Commun       Date:  2018-07-02       Impact factor: 14.919

Review 10.  Common Features of the Pericentromere and Nucleolus.

Authors:  Colleen J Lawrimore; Kerry Bloom
Journal:  Genes (Basel)       Date:  2019-12-10       Impact factor: 4.096

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  2 in total

1.  DNA damage reduces heterogeneity and coherence of chromatin motions.

Authors:  Maëlle Locatelli; Josh Lawrimore; Hua Lin; Sarvath Sanaullah; Clayton Seitz; Dave Segall; Paul Kefer; Naike Salvador Moreno; Benton Lietz; Rebecca Anderson; Julia Holmes; Chongli Yuan; George Holzwarth; Kerry S Bloom; Jing Liu; Keith Bonin; Pierre-Alexandre Vidi
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-12       Impact factor: 12.779

2.  Special issue: Nuclear architecture and chromatin motions in the DNA damage response.

Authors:  Maëlle Locatelli; Pierre-Alexandre Vidi
Journal:  Mutat Res       Date:  2020-08-14       Impact factor: 3.151

  2 in total

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