Literature DB >> 32515958

Insulin Dissociates by Diverse Mechanisms of Coupled Unfolding and Unbinding.

Adam Antoszewski1, Chi-Jui Feng1, Bodhi P Vani1, Erik H Thiede2,3, Lu Hong4, Jonathan Weare5, Andrei Tokmakoff1,6,7, Aaron R Dinner1,6,7.   

Abstract

The protein hormone insulin exists in various oligomeric forms, and a key step in binding its cellular receptor is dissociation of the dimer. This dissociation process and its corresponding association process have come to serve as paradigms of coupled (un)folding and (un)binding more generally. Despite its fundamental and practical importance, the mechanism of insulin dimer dissociation remains poorly understood. Here, we use molecular dynamics simulations, leveraging recent developments in umbrella sampling, to characterize the energetic and structural features of dissociation in unprecedented detail. We find that the dissociation is inherently multipathway with limiting behaviors corresponding to conformational selection and induced fit, the two prototypical mechanisms of coupled folding and binding. Along one limiting path, the dissociation leads to detachment of the C-terminal segment of the insulin B chain from the protein core, a feature believed to be essential for receptor binding. We simulate IR spectroscopy experiments to aid in interpreting current experiments and identify sites where isotopic labeling can be most effective for distinguishing the contributions of the limiting mechanisms.

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Year:  2020        PMID: 32515958      PMCID: PMC7774804          DOI: 10.1021/acs.jpcb.0c03521

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  62 in total

1.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

2.  A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes.

Authors:  Yaakov Levy; Samuel S Cho; José N Onuchic; Peter G Wolynes
Journal:  J Mol Biol       Date:  2005-01-26       Impact factor: 5.469

Review 3.  A thing of beauty: Structure and function of insulin's "aromatic triplet".

Authors:  Michael A Weiss; Michael C Lawrence
Journal:  Diabetes Obes Metab       Date:  2018-09       Impact factor: 6.577

4.  Insulin/receptor binding: the last piece of the puzzle? What recent progress on the structure of the insulin/receptor complex tells us (or not) about negative cooperativity and activation.

Authors:  Pierre De Meyts
Journal:  Bioessays       Date:  2015-01-29       Impact factor: 4.345

5.  A molecular interpretation of 2D IR protein folding experiments with Markov state models.

Authors:  Carlos R Baiz; Yu-Shan Lin; Chunte Sam Peng; Kyle A Beauchamp; Vincent A Voelz; Vijay S Pande; Andrei Tokmakoff
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

6.  Effect of ethanol on insulin dimer dissociation.

Authors:  Puja Banerjee; Sayantan Mondal; Biman Bagchi
Journal:  J Chem Phys       Date:  2019-02-28       Impact factor: 3.488

7.  Two Dimensional Window Exchange Umbrella Sampling for Transmembrane Helix Assembly.

Authors:  Soohyung Park; Wonpil Im
Journal:  J Chem Theory Comput       Date:  2012-11-19       Impact factor: 6.006

Review 8.  Computational Amide I 2D IR Spectroscopy as a Probe of Protein Structure and Dynamics.

Authors:  Mike Reppert; Andrei Tokmakoff
Journal:  Annu Rev Phys Chem       Date:  2016-03-31       Impact factor: 12.703

9.  All-atom empirical potential for molecular modeling and dynamics studies of proteins.

Authors:  A D MacKerell; D Bashford; M Bellott; R L Dunbrack; J D Evanseck; M J Field; S Fischer; J Gao; H Guo; S Ha; D Joseph-McCarthy; L Kuchnir; K Kuczera; F T Lau; C Mattos; S Michnick; T Ngo; D T Nguyen; B Prodhom; W E Reiher; B Roux; M Schlenkrich; J C Smith; R Stote; J Straub; M Watanabe; J Wiórkiewicz-Kuczera; D Yin; M Karplus
Journal:  J Phys Chem B       Date:  1998-04-30       Impact factor: 2.991

10.  Insulin dimer dissociation in aqueous solution: A computational study of free energy landscape and evolving microscopic structure along the reaction pathway.

Authors:  Puja Banerjee; Sayantan Mondal; Biman Bagchi
Journal:  J Chem Phys       Date:  2018-09-21       Impact factor: 3.488

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  7 in total

1.  Kinetics of Phenol Escape from the Insulin R6 Hexamer.

Authors:  Adam Antoszewski; Chatipat Lorpaiboon; John Strahan; Aaron R Dinner
Journal:  J Phys Chem B       Date:  2021-10-14       Impact factor: 2.991

2.  Resolving Dynamics in the Ensemble: Finding Paths through Intermediate States and Disordered Protein Structures.

Authors:  Adam K Nijhawan; Arnold M Chan; Darren J Hsu; Lin X Chen; Kevin L Kohlstedt
Journal:  J Phys Chem B       Date:  2021-11-08       Impact factor: 3.466

3.  Identifying signatures of proteolytic stability and monomeric propensity in O-glycosylated insulin using molecular simulation.

Authors:  Wei-Tse Hsu; Dominique A Ramirez; Tarek Sammakia; Zhongping Tan; Michael R Shirts
Journal:  J Comput Aided Mol Des       Date:  2022-05-04       Impact factor: 4.179

4.  Long-Time-Scale Predictions from Short-Trajectory Data: A Benchmark Analysis of the Trp-Cage Miniprotein.

Authors:  John Strahan; Adam Antoszewski; Chatipat Lorpaiboon; Bodhi P Vani; Jonathan Weare; Aaron R Dinner
Journal:  J Chem Theory Comput       Date:  2021-04-28       Impact factor: 6.006

5.  Computational IR Spectroscopy of Insulin Dimer Structure and Conformational Heterogeneity.

Authors:  Chi-Jui Feng; Anton Sinitskiy; Vijay Pande; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2021-04-30       Impact factor: 2.991

Review 6.  Current State and Principles of Basal Insulin Therapy in Type 2 Diabetes.

Authors:  Hernando Vargas-Uricoechea
Journal:  J Clin Med Res       Date:  2022-01-29

Review 7.  Progress in Simulation Studies of Insulin Structure and Function.

Authors:  Biswajit Gorai; Harish Vashisth
Journal:  Front Endocrinol (Lausanne)       Date:  2022-06-20       Impact factor: 6.055

  7 in total

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