Literature DB >> 32514177

Enhancer RNAs are an important regulatory layer of the epigenome.

Vittorio Sartorelli1, Shannon M Lauberth2.   

Abstract

Noncoding RNAs (ncRNAs) direct a remarkable number of diverse functions in development and disease through their regulation of transcription, RNA processing and translation. Leading the charge in the RNA revolution is a class of ncRNAs that are synthesized at active enhancers, called enhancer RNAs (eRNAs). Here, we review recent insights into the biogenesis of eRNAs and the mechanisms underlying their multifaceted functions and consider how these findings could inform future investigations into enhancer transcription and eRNA function.

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Year:  2020        PMID: 32514177      PMCID: PMC7343394          DOI: 10.1038/s41594-020-0446-0

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  122 in total

1.  TNFα signaling exposes latent estrogen receptor binding sites to alter the breast cancer cell transcriptome.

Authors:  Hector L Franco; Anusha Nagari; W Lee Kraus
Journal:  Mol Cell       Date:  2015-03-05       Impact factor: 17.970

Review 2.  Enhancer function: mechanistic and genome-wide insights come together.

Authors:  Jennifer L Plank; Ann Dean
Journal:  Mol Cell       Date:  2014-07-03       Impact factor: 17.970

Review 3.  Long-range enhancer-promoter contacts in gene expression control.

Authors:  Stefan Schoenfelder; Peter Fraser
Journal:  Nat Rev Genet       Date:  2019-08       Impact factor: 53.242

Review 4.  Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution.

Authors:  Hannah K Long; Sara L Prescott; Joanna Wysocka
Journal:  Cell       Date:  2016-11-17       Impact factor: 41.582

5.  An atlas of active enhancers across human cell types and tissues.

Authors:  Robin Andersson; Claudia Gebhard; Michael Rehli; Albin Sandelin; Irene Miguel-Escalada; Ilka Hoof; Jette Bornholdt; Mette Boyd; Yun Chen; Xiaobei Zhao; Christian Schmidl; Takahiro Suzuki; Evgenia Ntini; Erik Arner; Eivind Valen; Kang Li; Lucia Schwarzfischer; Dagmar Glatz; Johanna Raithel; Berit Lilje; Nicolas Rapin; Frederik Otzen Bagger; Mette Jørgensen; Peter Refsing Andersen; Nicolas Bertin; Owen Rackham; A Maxwell Burroughs; J Kenneth Baillie; Yuri Ishizu; Yuri Shimizu; Erina Furuhata; Shiori Maeda; Yutaka Negishi; Christopher J Mungall; Terrence F Meehan; Timo Lassmann; Masayoshi Itoh; Hideya Kawaji; Naoto Kondo; Jun Kawai; Andreas Lennartsson; Carsten O Daub; Peter Heutink; David A Hume; Torben Heick Jensen; Harukazu Suzuki; Yoshihide Hayashizaki; Ferenc Müller; Alistair R R Forrest; Piero Carninci
Journal:  Nature       Date:  2014-03-27       Impact factor: 49.962

6.  Enhancer evolution across 20 mammalian species.

Authors:  Diego Villar; Camille Berthelot; Sarah Aldridge; Tim F Rayner; Margus Lukk; Miguel Pignatelli; Thomas J Park; Robert Deaville; Jonathan T Erichsen; Anna J Jasinska; James M A Turner; Mads F Bertelsen; Elizabeth P Murchison; Paul Flicek; Duncan T Odom
Journal:  Cell       Date:  2015-01-29       Impact factor: 41.582

7.  High-throughput identification of human SNPs affecting regulatory element activity.

Authors:  Joris van Arensbergen; Ludo Pagie; Vincent D FitzPatrick; Marcel de Haas; Marijke P Baltissen; Federico Comoglio; Robin H van der Weide; Hans Teunissen; Urmo Võsa; Lude Franke; Elzo de Wit; Michiel Vermeulen; Harmen J Bussemaker; Bas van Steensel
Journal:  Nat Genet       Date:  2019-06-28       Impact factor: 38.330

8.  Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.

Authors:  Michael T Y Lam; Han Cho; Hanna P Lesch; David Gosselin; Sven Heinz; Yumiko Tanaka-Oishi; Christopher Benner; Minna U Kaikkonen; Aneeza S Kim; Mika Kosaka; Cindy Y Lee; Andy Watt; Tamar R Grossman; Michael G Rosenfeld; Ronald M Evans; Christopher K Glass
Journal:  Nature       Date:  2013-06-02       Impact factor: 49.962

9.  Integrator mediates the biogenesis of enhancer RNAs.

Authors:  Fan Lai; Alessandro Gardini; Anda Zhang; Ramin Shiekhattar
Journal:  Nature       Date:  2015-08-26       Impact factor: 49.962

10.  Mutant p53 shapes the enhancer landscape of cancer cells in response to chronic immune signaling.

Authors:  Homa Rahnamoun; Hanbin Lu; Sascha H Duttke; Christopher Benner; Christopher K Glass; Shannon M Lauberth
Journal:  Nat Commun       Date:  2017-09-29       Impact factor: 14.919

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  64 in total

Review 1.  Biologia Futura: progress and future perspectives of long non-coding RNAs in forest trees.

Authors:  Maheswari Patturaj; Aiswarya Munusamy; Nithishkumar Kannan; Yasodha Ramasamy
Journal:  Biol Futur       Date:  2021-11-29

2.  Finding and Verifying Enhancers for Endothelial-Expressed Genes.

Authors:  Alice Neal; Helena Rodriguez-Caro; Sarah De Val
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Cap analysis of gene expression (CAGE) and noncoding regulatory elements.

Authors:  Matteo Maurizio Guerrini; Akiko Oguchi; Akari Suzuki; Yasuhiro Murakawa
Journal:  Semin Immunopathol       Date:  2021-09-01       Impact factor: 9.623

4.  Transcriptional Regulation of RUNX1: An Informatics Analysis.

Authors:  Amarni L Thomas; Judith Marsman; Jisha Antony; William Schierding; Justin M O'Sullivan; Julia A Horsfield
Journal:  Genes (Basel)       Date:  2021-07-29       Impact factor: 4.096

Review 5.  Transcriptional enhancers at 40: evolution of a viral DNA element to nuclear architectural structures.

Authors:  Sreejith J Nair; Tom Suter; Susan Wang; Lu Yang; Feng Yang; Michael G Rosenfeld
Journal:  Trends Genet       Date:  2022-07-07       Impact factor: 11.821

6.  Enhancer RNA m6A methylation facilitates transcriptional condensate formation and gene activation.

Authors:  Joo-Hyung Lee; Ruoyu Wang; Feng Xiong; Joanna Krakowiak; Zian Liao; Phuoc T Nguyen; Elena V Moroz-Omori; Jiaofang Shao; Xiaoyu Zhu; Michael J Bolt; Haoyi Wu; Pankaj K Singh; Mingjun Bi; Caleb J Shi; Naadir Jamal; Guojie Li; Ragini Mistry; Sung Yun Jung; Kuang-Lei Tsai; Josephine C Ferreon; Fabio Stossi; Amedeo Caflisch; Zhijie Liu; Michael A Mancini; Wenbo Li
Journal:  Mol Cell       Date:  2021-08-09       Impact factor: 19.328

7.  Population-level variation in enhancer expression identifies disease mechanisms in the human brain.

Authors:  Pengfei Dong; Gabriel E Hoffman; Pasha Apontes; Jaroslav Bendl; Samir Rahman; Michael B Fernando; Biao Zeng; James M Vicari; Wen Zhang; Kiran Girdhar; Kayla G Townsley; Ruth Misir; Kristen J Brennand; Vahram Haroutunian; Georgios Voloudakis; John F Fullard; Panos Roussos
Journal:  Nat Genet       Date:  2022-09-26       Impact factor: 41.307

8.  Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells.

Authors:  Le Xiong; Erik A Tolen; Jinmi Choi; Sergiy Velychko; Livia Caizzi; Taras Velychko; Kenjiro Adachi; Caitlin M MacCarthy; Michael Lidschreiber; Patrick Cramer; Hans R Schöler
Journal:  Elife       Date:  2022-05-27       Impact factor: 8.713

Review 9.  'Enhancing' red cell fate through epigenetic mechanisms.

Authors:  Marlies P Rossmann; Leonard I Zon
Journal:  Curr Opin Hematol       Date:  2021-05-01       Impact factor: 3.284

Review 10.  Epigenetic regulation in Huntington's disease.

Authors:  Jae Wook Hyeon; Albert H Kim; Hiroko Yano
Journal:  Neurochem Int       Date:  2021-05-24       Impact factor: 4.297

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