Literature DB >> 32514023

The search for microbial dark matter.

Amber Dance.   

Abstract

Keywords:  Biological techniques; Microbiology; Microbiome

Mesh：

Substances：

Year:  2020        PMID： 32514023     DOI： 10.1038/d41586-020-01684-z

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  9 in total

1.  Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle.

Authors:  Xuesong He; Jeffrey S McLean; Anna Edlund; Shibu Yooseph; Adam P Hall; Su-Yang Liu; Pieter C Dorrestein; Eduardo Esquenazi; Ryan C Hunter; Genhong Cheng; Karen E Nelson; Renate Lux; Wenyuan Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-22       Impact factor: 11.205

2.  A hidden pitfall in the preparation of agar media undermines microorganism cultivability.

Authors:  Tomohiro Tanaka; Kosei Kawasaki; Serina Daimon; Wataru Kitagawa; Kyosuke Yamamoto; Hideyuki Tamaki; Michiko Tanaka; Cindy H Nakatsu; Yoichi Kamagata
Journal:  Appl Environ Microbiol       Date:  2014-10-03       Impact factor: 4.792

3.  Enrichment of previously uncultured bacteria from natural complex communities by adhesion to solid surfaces.

Authors:  Frederic Gich; Monika Anna Janys; Melanie König; Jörg Overmann
Journal:  Environ Microbiol       Date:  2012-09-12       Impact factor: 5.491

4.  In situ cultivation of previously uncultivable microorganisms using the ichip.

Authors:  Brittany Berdy; Amy L Spoering; Losee L Ling; Slava S Epstein
Journal:  Nat Protoc       Date:  2017-09-29       Impact factor: 13.491

Review 5.  Culturing the human microbiota and culturomics.

Authors:  Jean-Christophe Lagier; Grégory Dubourg; Matthieu Million; Frédéric Cadoret; Melhem Bilen; Florence Fenollar; Anthony Levasseur; Jean-Marc Rolain; Pierre-Edouard Fournier; Didier Raoult
Journal:  Nat Rev Microbiol       Date:  2018-05-01       Impact factor: 60.633

6.  Prevotella marseillensis sp. nov., a new bacterium isolated from a patient with recurrent Clostridium difficile infection.

Authors:  E Kuete Yimagou; F Mekhalif; M Lamine Tall; J P Baudoin; D Raoult; J Y Bou Khalil
Journal:  New Microbes New Infect       Date:  2019-10-09

7.  Targeted isolation and cultivation of uncultivated bacteria by reverse genomics.

Authors:  Karissa L Cross; James H Campbell; Manasi Balachandran; Alisha G Campbell; Connor J Cooper; Ann Griffen; Matthew Heaton; Snehal Joshi; Dawn Klingeman; Eugene Leys; Zamin Yang; Jerry M Parks; Mircea Podar
Journal:  Nat Biotechnol       Date:  2019-09-30       Impact factor: 68.164

8.  Taxono-genomics and description of Gordonibacter massiliensis sp. nov., a new bacterium isolated from stool of healthy patient.

Authors:  I I Ngom; I Hasni; C I Lo; S I Traore; A Fontanini; D Raoult; F Fenollar
Journal:  New Microbes New Infect       Date:  2019-11-29

9.  Isolation of an archaeon at the prokaryote-eukaryote interface.

Authors:  Hiroyuki Imachi; Masaru K Nobu; Nozomi Nakahara; Yuki Morono; Miyuki Ogawara; Yoshihiro Takaki; Yoshinori Takano; Katsuyuki Uematsu; Tetsuro Ikuta; Motoo Ito; Yohei Matsui; Masayuki Miyazaki; Kazuyoshi Murata; Yumi Saito; Sanae Sakai; Chihong Song; Eiji Tasumi; Yuko Yamanaka; Takashi Yamaguchi; Yoichi Kamagata; Hideyuki Tamaki; Ken Takai
Journal:  Nature       Date:  2020-01-15       Impact factor: 69.504
  9 in total
  7 in total

1.  Complex microbial communities inhabiting natural Cordyceps militaris and the habitat soil and their predicted functions.

Authors:  Xiao-Mei Zhang; De-Xiang Tang; Qing-Qing Li; Yuan-Bing Wang; Zhi-Hong Xu; Wen-Jun Li; Hong Yu
Journal:  Antonie Van Leeuwenhoek       Date:  2021-02-27       Impact factor: 2.271

2.  A Matter of Metals: Copper but Not Cadmium Affects the Microbial Alpha-Diversity of Soils and Sediments - a Meta-analysis.

Authors:  Marco Signorini; Gabriele Midolo; Stefano Cesco; Tanja Mimmo; Luigimaria Borruso
Journal:  Microb Ecol       Date:  2022-09-30       Impact factor: 4.192

3.  Metagenomics to characterize sediment microbial biodiversity associated with fishing exposure within the Stellwagen Bank National Marine Sanctuary.

Authors:  Spencer A Bruce; Semra A Aytur; Cheryl P Andam; John P Bucci
Journal:  Sci Rep       Date:  2022-06-09       Impact factor: 4.996

4.  Characterizing the culturable surface microbiomes of diverse marine animals.

Authors:  Abigail G Keller; Amy Apprill; Philippe Lebaron; Jooke Robbins; Tracy A Romano; Ellysia Overton; Yuying Rong; Ruiyi Yuan; Scott Pollara; Kristen E Whalen
Journal:  FEMS Microbiol Ecol       Date:  2021-03-31       Impact factor: 4.194

5.  Insights Into the Cultivable Bacterial Fraction of Sediments From the Red Sea Mangroves and Physiological, Chemotaxonomic, and Genomic Characterization of Mangrovibacillus cuniculi gen. nov., sp. nov., a Novel Member of the Bacillaceae Family.

Authors:  Fatmah O Sefrji; Ramona Marasco; Grégoire Michoud; Kholoud A Seferji; Giuseppe Merlino; Daniele Daffonchio
Journal:  Front Microbiol       Date:  2022-02-18       Impact factor: 5.640

Review 6.  Micro-Technologies for Assessing Microbial Dynamics in Controlled Environments.

Authors:  Shanna-Leigh Davidson; Tagbo H R Niepa
Journal:  Front Microbiol       Date:  2022-01-28       Impact factor: 5.640

Review 7.  Systems Biology: A Multi-Omics Integration Approach to Metabolism and the Microbiome.

Authors:  Jang Won Son; Saeed Shoaie; Sunjae Lee
Journal:  Endocrinol Metab (Seoul)       Date:  2020-09-22
  7 in total

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