Literature DB >> 32511088

Massilia arenosa sp. nov., isolated from the soil of a cultivated maize field.

Rachel Raths1, Vincent Peta1, Heike Bücking1.   

Abstract

Strain MC02T, a Gram-stain-negative, rod-shaped bacterium, was isolated from field soil collected from California, USA. To examine if MC02T represents a novel species, we compared its colony morphology, 16S rRNA gene and whole genome sequence, and its metabolic phenotype using Biolog GenIII and MALDI-TOF analyses compared to reference strains. Based on 16S rRNA gene and whole genome sequencing, MC02T belongs to the genus Massilia and Massilia agri K-3-1T is the most similar strain with 96.97 % 16S rRNA gene sequence identity. MALDI-TOF analysis revealed that Massilia aerilata DSM19289T is the closest match, but the similarity score was much lower than the ≥1.7 threshold for a reliable identification at the genus level. The predominant fatty acids were summed feature 3 (C16 : 1⍵7c and/or C16 : 1⍵6c; 49.07 %) and C16 : 0 (30.01 %). The genome is 5.02 Mbp and the G+C content is 66.2 mol%. Whole genome comparisons to the closest related strains revealed an average amino acid identity value of 67.4 %, an OrthoANI similarity of 77.1 %, and a DNA-DNA-hybridization probability ≥70 %, confirming that MC02T represents a novel species. Strain MC02T can grow at pH 6 but not at pH 5, and a salt concentration of ≥1 % inhibits its growth. In contrast to other Massilia strains, MC02T can utilize turanose, inosine and l-serine. The genome of MC02T shows putative endophyte genes such as a nitrate reductase, several phosphatases, and biotin biosynthesis genes, 26 flagellar motility genes and 14 invasion and intracellular resistance genes. Based on its metabolic, physiological and genomic characteristics, we propose that strain MC02T (NRRL B-65554T=ATCC TSD-200T=LMG 31737T) represents a novel species of the genus Massilia with the name Massilia arenosa sp. nov.

Entities:  

Keywords:  Oxalobacteraceae; betaproteobacteria; endophyte; plant-growth promoting bacteria; rhizosphere

Year:  2020        PMID: 32511088     DOI: 10.1099/ijsem.0.004266

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  2 in total

1.  Massilia cellulosiltytica sp. nov., a novel cellulose-degrading bacterium isolated from rhizosphere soil of rice (Oryza sativa L.) and its whole genome analysis.

Authors:  Chuanjiao Du; Chenxu Li; Peng Cao; Tingting Li; Dandan Du; Xiangjing Wang; Junwei Zhao; Wensheng Xiang
Journal:  Antonie Van Leeuwenhoek       Date:  2021-07-29       Impact factor: 2.271

2.  Novel Effects of Leonardite-Based Applications on Sugar Beet.

Authors:  Maria C Della Lucia; Giovanni Bertoldo; Chiara Broccanello; Laura Maretto; Samathmika Ravi; Francesco Marinello; Luigi Sartori; Giovanni Marsilio; Andrea Baglieri; Alessandro Romano; Mauro Colombo; Francesco Magro; Giovanni Campagna; Giuseppe Concheri; Andrea Squartini; Piergiorgio Stevanato
Journal:  Front Plant Sci       Date:  2021-03-18       Impact factor: 5.753

  2 in total

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