Literature DB >> 32496751

Translational Opportunities for Microfluidic Technologies to Enable Precision Epigenomics.

Yi Xu1, Steven R Doonan1, Tamas Ordog2, Ryan C Bailey1.   

Abstract

Personalizing health care by taking genetic, environmental, and lifestyle factors into account is central to modern medicine. The crucial and pervasive roles epigenetic factors play in shaping gene-environment interactions are now well recognized. However, identifying robust epigenetic biomarkers and translating them to clinical tests has been difficult due in part to limitations of available platforms to detect epigenetic features genome-wide (epigenomic assays). This Feature introduces several important prospects for precision epigenomics, highlights capabilities and limitations of current laboratory technologies, and emphasizes opportunities for microfluidic tools to facilitate translation of epigenetic analyses to the clinic, with a particular focus on methods to profile gene-associated histone modifications and their impacts on chromatin structure and gene expression.

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Year:  2020        PMID: 32496751      PMCID: PMC8053002          DOI: 10.1021/acs.analchem.0c01288

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  97 in total

1.  A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.

Authors:  M Frommer; L E McDonald; D S Millar; C M Collis; F Watt; G W Grigg; P L Molloy; C L Paul
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-01       Impact factor: 11.205

2.  Controlled encapsulation of single-cells into monodisperse picolitre drops.

Authors:  Jon F Edd; Dino Di Carlo; Katherine J Humphry; Sarah Köster; Daniel Irimia; David A Weitz; Mehmet Toner
Journal:  Lab Chip       Date:  2008-06-13       Impact factor: 6.799

3.  Phase separation of ligand-activated enhancers licenses cooperative chromosomal enhancer assembly.

Authors:  Sreejith J Nair; Lu Yang; Dario Meluzzi; Soohwan Oh; Feng Yang; Meyer J Friedman; Susan Wang; Tom Suter; Ibraheem Alshareedah; Amir Gamliel; Qi Ma; Jie Zhang; Yiren Hu; Yuliang Tan; Kenneth A Ohgi; Ranveer Singh Jayani; Priya R Banerjee; Aneel K Aggarwal; Michael G Rosenfeld
Journal:  Nat Struct Mol Biol       Date:  2019-03-04       Impact factor: 15.369

Review 4.  Challenges in the analysis of long noncoding RNA functionality.

Authors:  Sergio Leone; Raffaella Santoro
Journal:  FEBS Lett       Date:  2016-07-26       Impact factor: 4.124

Review 5.  Short and Long Noncoding RNAs Regulate the Epigenetic Status of Cells.

Authors:  Shizuka Uchida; Roberto Bolli
Journal:  Antioxid Redox Signal       Date:  2017-09-28       Impact factor: 8.401

6.  Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution.

Authors:  Ho Sung Rhee; B Franklin Pugh
Journal:  Cell       Date:  2011-12-09       Impact factor: 41.582

7.  Rapid fabrication of nickel molds for prototyping embossed plastic microfluidic devices.

Authors:  Richard Novak; Navpreet Ranu; Richard A Mathies
Journal:  Lab Chip       Date:  2013-04-21       Impact factor: 6.799

Review 8.  Chromatin modifiers and remodellers: regulators of cellular differentiation.

Authors:  Taiping Chen; Sharon Y R Dent
Journal:  Nat Rev Genet       Date:  2013-12-24       Impact factor: 53.242

Review 9.  RNA-mediated epigenetic regulation of gene expression.

Authors:  Daniel Holoch; Danesh Moazed
Journal:  Nat Rev Genet       Date:  2015-01-02       Impact factor: 53.242

Review 10.  Roles for Non-coding RNAs in Spatial Genome Organization.

Authors:  Negin Khosraviani; Lauren A Ostrowski; Karim Mekhail
Journal:  Front Cell Dev Biol       Date:  2019-12-19
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  1 in total

Review 1.  Perspectives on the Role of Histone Modification in Breast Cancer Progression and the Advanced Technological Tools to Study Epigenetic Determinants of Metastasis.

Authors:  Jialang Zhuang; Qin Huo; Fan Yang; Ni Xie
Journal:  Front Genet       Date:  2020-10-29       Impact factor: 4.599

  1 in total

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