| Literature DB >> 32489178 |
Lidia Redondo-Bravo1, Concepción Delgado-Sanz2, Jesús Oliva2, Tomás Vega3, Jose Lozano3, Amparo Larrauri2.
Abstract
BackgroundUnderstanding influenza seasonality is necessary for determining policies for influenza control.AimWe characterised transmissibility during seasonal influenza epidemics, including one influenza pandemic, in Spain during the 21th century by using the moving epidemic method (MEM) to calculate intensity levels and estimate differences across seasons and age groups.MethodsWe applied the MEM to Spanish Influenza Sentinel Surveillance System data from influenza seasons 2001/02 to 2017/18. A modified version of Goldstein's proxy was used as an epidemiological-virological parameter. We calculated the average starting week and peak, the length of the epidemic period and the length from the starting week to the peak of the epidemic, by age group and according to seasonal virus circulation.ResultsIndividuals under 15 years of age presented higher transmissibility, especially in the 2009 influenza A(H1N1) pandemic. Seasons with dominance/co-dominance of influenza A(H3N2) virus presented high intensities in older adults. The 2004/05 influenza season showed the highest influenza-intensity level for all age groups. In 12 seasons, the epidemic started between week 50 and week 3. Epidemics started earlier in individuals under 15 years of age (-1.8 weeks; 95% confidence interval (CI):-2.8 to -0.7) than in those over 64 years when influenza B virus circulated as dominant/co-dominant. The average time from start to peak was 4.3 weeks (95% CI: 3.6-5.0) and the average epidemic length was 8.7 weeks (95% CI: 7.9-9.6).ConclusionsThese findings provide evidence for intensity differences across seasons and age groups, and can be used guide public health actions to diminish influenza-related morbidity and mortality.Entities:
Keywords: epidemiology; influenza; influenza-like illnesses; surveillance
Mesh:
Year: 2020 PMID: 32489178 PMCID: PMC7268270 DOI: 10.2807/1560-7917.ES.2020.25.21.1900364
Source DB: PubMed Journal: Euro Surveill ISSN: 1025-496X
Characteristics of the Spanish Influenza Sentinel Surveillance System (SISSS) and surveillance information, Spain, influenza seasons 2001/02–2017/18
| Influenza season | Number of sentinel physiciansa | Surveilled population (n) | Percentage of surveilled populationb (%) | ILIs notified (n) | Sentinel specimens tested (n) | Positivity rate (%) | Dominant/co-dominant virusc |
|---|---|---|---|---|---|---|---|
| 2001/02 | 342 | 320,102 | 0.8 | 8,488 | 1,214 | 43.4 | A(H3N2) |
| 2002/03 | 340 | 318,736 | 0.8 | 4,684 | 1,437 | 30.5 | B |
| 2003/04 | 422 | 395,137 | 0.9 | 8,045 | 1,410 | 30.9 | A(H3N2) |
| 2004/05 | 453 | 568,906 | 1.3 | 18,223 | 1,781 | 46.0 | A(H3N2) |
| 2005/06 | 538 | 648,676 | 1.5 | 9,082 | 1,885 | 30.6 | A(H1N1)/B |
| 2006/07 | 668 | 619,830 | 1.4 | 12,381 | 1,848 | 45.1 | A(H3N2) |
| 2007/08 | 646 | 612,619 | 1.4 | 12,732 | 2,023 | 49.6 | A(H1N1)/B |
| 2008/09 | 698 | 667,414 | 1.5 | 12,688 | 2,538 | 42.5 | A(H3N2) |
| 2009/10 | 867 | 842,190 | 1.9 | 24,459 | 11,218 | 41.7 | A(H1N1)pdm09 |
| 2010/11 | 841 | 820,277 | 1.8 | 17,224 | 5,482 | 45.0 | A(H1N1)pdm09 |
| 2011/12 | 887 | 845,380 | 1.8 | 18,873 | 5,858 | 50.1 | A(H3N2) |
| 2012/13 | 831 | 819,328 | 1.8 | 17,876 | 5,173 | 51.5 | B |
| 2013/14 | 873 | 832,189 | 1.8 | 15,864 | 5,060 | 50.3 | A(H1N1)pdm09/A(H3N2) |
| 2014/15 | 788 | 765,065 | 1.6 | 18,955 | 5,101 | 54.5 | A(H3N2) |
| 2015/16 | 823 | 796,472 | 1.7 | 16,951 | 5,308 | 51.1 | A(H1N1)pdm09 |
| 2016/17 | 789 | 779,536 | 1.7 | 13,430 | 4,478 | 47.8 | A(H3N2) |
| 2017/18 | 797 | 800,016 | 1.7 | 19,505 | 6,034 | 58.2 | B/A(H3N2) |
ILI: influenza-like illness.
a General practitioners and paediatricians.
b Of the total population of the Spanish regions participating in the SISSS each influenza season.
c A virus that circulated in a proportion ≥ 60% was considered dominant, and co-dominant in a proportion > 40 and < 60%.
Figure 1Weekly analysed swabs and influenza positivity rate, Spain, influenza seasons 2001/02–2017/18
Figure 2Influenza epidemic thresholds and intensity levels according to the moving epidemic method (MEM), overall (A) and by age group (B,C,D), using Proxya, Spain, influenza seasons 2001/02–2017/18
Influenza epidemics by dominant/co-dominant virus, starting week, peak week, length and peak intensity according to the moving epidemic method (MEM) using Proxya, Spain, influenza seasons 2001/02–2017/18
| Influenza season | Dominant/co-dominant virusb | Starting week | Peak week | Epidemic length (weeks) | Peak intensityc |
|---|---|---|---|---|---|
| 2001/02 | A(H3N2) | 1 | 4 | 10 | Low |
| 2002/03 | B | 51 | 4 | 11 | Low |
| 2003/04 | A(H3N2) | 43 | 47 | 9 | Low |
| 2004/05 | A(H3N2) | 50 | 2 | 12 | Very high |
| 2005/06 | A(H1N1)/B | 8 | 11 | 7 | Low |
| 2006/07 | A(H3N2) | 2 | 6 | 8 | Medium |
| 2007/08 | A(H1N1)/B | 48 | 2 | 14 | Low |
| 2008/09 | A(H3N2) | 50 | 1 | 9 | Medium |
| 2009/10 | A(H1N1)pdm09 | 40 | 46 | 11 | Medium |
| 2010/11 | A(H1N1)pdm09 | 51 | 2 | 10 | Medium |
| 2011/12 | A(H3N2) | 52 | 7 | 11 | Medium |
| 2012/13 | B | 3 | 8 | 10 | Medium |
| 2013/14 | A(H1N1)pdm09/A(H3N2) | 1 | 4 | 8 | Medium |
| 2014/15 | A(H3N2) | 2 | 5 | 10 | High |
| 2015/16 | A(H1N1)pdm09 | 4 | 9 | 10 | Low |
| 2016/17 | A(H3N2) | 50 | 3 | 9 | Medium |
| 2017/18 | B/A(H3N2) | 50 | 3 | 13 | Medium |
a Proxy is defined as weekly age-specific influenza-like illness (ILI) cases/100,000 population multiplied by the all-ages weekly percentage of samples that test positive for influenza.
b A virus that circulated in a proportion ≥ 60% was considered dominant, and co-dominant in a proportion> 40 and < 60%.
c Level of intensity reached in the week with maximum influenza activity of the season.
Influenza epidemic thresholds and intensity thresholds according to the moving epidemic method (MEM) using Proxya, Spain, influenza seasons 2001/02–2017/18
| Age group (years) | Epidemic thresholds | Intensity thresholds | ||
|---|---|---|---|---|
| Low | Medium | High | ||
| <15 | 52.4 | 285.3 | 457.3 | 563.4 |
| 15–64 | 29.0 | 105.3 | 220.6 | 305.8 |
| > 64 | 13.94 | 38.1 | 117.4 | 193.0 |
| All ages | 29.3 | 132.3 | 237.1 | 306.8 |
a Proxy is defined as weekly age-specific influenza-like illness (ILI) cases/100,000 population multiplied by the all-ages weekly percentage of samples that test positive for influenza.
Differences in starting and peak weeks by age group and dominant/co-dominant influenza virus, using Proxya, Spain, influenza seasons 2001/02–2017/18
| Differences | Age groups compared (years) | Dominant/co-dominant virusb | Mean | 95% CI | |
|---|---|---|---|---|---|
| Lower | Upper | ||||
| Among starting weeks | < 15 vs 15–64 | A(H1N1)c | −0.2 | −1.2 | 0.8 |
| A(H3N2) | 0.0 | −0.8 | 0.8 | ||
| B | −0.8 | −2.3 | 0.8 | ||
| < 15 vs > 64 | A(H1N1)c | −0.6 | −2.8 | 1.6 | |
| A(H3N2) | 0.0 | −0.8 | 0.8 | ||
| B | −1.8 | −2.8 | −0.7 | ||
| Among peak weeksd | < 15 vs 15–64 | A(H1N1)c | 0.0 | −1.5 | 1.5 |
| A(H3N2) | 0.0 | −0.7 | 0.7 | ||
| B | −1.3 | −3.1 | 0.6 | ||
| < 15 vs > 64 | A(H1N1)c | 0.8 | −1.7 | 3.3 | |
| A(H3N2) | −0.3 | −1.0 | 0.5 | ||
| B | 0.5 | −2.0 | 3.0 | ||
CI: confidence interval.
a Proxy is defined as weekly age-specific influenza-like illness (ILI) cases/100,000 population multiplied by the all-ages weekly percentage of samples that test positive for influenza.
b A virus that circulated within the season in a proportion ≥ 60% was considered dominant and co-dominant in a proportion > 40 and > 60%.
c Influenza A(H1N1)pdm09 and A(H1N1) virus.
d Influenza season 2015/16 was excluded from this analysis as there was not a clear peak week; a plateau was observed between weeks 7 and 12.
Average weeks from start to peak week, and influenza epidemic length by dominant/co-dominant virus, using Proxya, Spain, influenza seasons 2001/02–2017/18
| Influenza virus circulation | Average time from start to peak (weeks) | Epidemic length (weeks) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Mean | 95% CI | p value | Mean | 95% CI | p value | ||||
| Lower | Upper | Lower | Upper | ||||||
| Dominant/co-dominant virusb | A(H1N1)c | 4.4 | 2.3 | 6.5 | 0.47 | 8.0 | 6.5 | 9.5 | 0.03 |
| A(H3N2) | 3.9 | 3.0 | 4.7 | 8.3 | 7.5 | 9.0 | |||
| B | 5.0 | 4.1 | 5.9 | 10.5 | 8.7 | 12.3 | |||
| Dominance/co-dominance seasond | Dominance seasons | 4.3 | 3.4 | 5.2 | 0.96 | 8.4 | 7.9 | 9.0 | 0.13 |
| Co-dominance seasons | 4.3 | 2.9 | 5.8 | 10.0 | 5.8 | 14.2 | |||
| Overall | 4.3 | 3.6 | 5.0 | NA | 8.7 | 7.9 | 9.6 | NA | |
CI: confidence interval; NA: not applicable.
a Proxy is defined as the weekly age-specific influenza-like illness (ILI) cases/100,000 population multiplied by the all-ages weekly percentage of samples that test positive for influenza.
b A type of virus that circulated in a proportion ≥ 60% was considered dominant, and co-dominant in a proportion > 40 and <60%. Within influenza A virus, the same rule is applied to dominant/co-dominant subtype.
c Influenza A(H1N1)pdm09 and A(H1N1) virus.
d Dominance season is when a dominant influenza virus has been circulating and co-dominance season is when a type/subtype co-dominant virus has been circulating.