Literature DB >> 32487353

Complementarity of Hydrogen/Deuterium Exchange Mass Spectrometry and Cryo-Electron Microscopy.

John R Engen1, Elizabeth A Komives2.   

Abstract

Methodological improvements in both single particle cryo-electron microscopy (cryo-EM) and hydrogen/deuterium exchange mass spectrometry (HDX-MS) mean that the two methods are being more frequently used together to tackle complex problems in structural biology. There are many benefits to this combination, including for the analysis of low-resolution density, for structural validation, in the analysis of individual proteins versus the same proteins in large complexes, studies of allostery, protein quality control during cryo-EM construct optimization, and in the study of protein movements/dynamics during function. As will be highlighted in this review, through careful considerations of potential sample and conformational heterogeneity, many joint studies have recently been demonstrated, and many future studies using this combination are anticipated.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  HDX-MS; cryo-EM; protein conformation; structural heterogeneity

Mesh:

Substances:

Year:  2020        PMID: 32487353      PMCID: PMC7502526          DOI: 10.1016/j.tibs.2020.05.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  44 in total

1.  Epitope and Paratope Mapping Reveals Temperature-Dependent Alterations in the Dengue-Antibody Interface.

Authors:  Xin-Xiang Lim; Arun Chandramohan; Xin-Ying Elisa Lim; James E Crowe; Shee-Mei Lok; Ganesh S Anand
Journal:  Structure       Date:  2017-08-17       Impact factor: 5.006

2.  Molecular structure of human P-glycoprotein in the ATP-bound, outward-facing conformation.

Authors:  Youngjin Kim; Jue Chen
Journal:  Science       Date:  2018-01-25       Impact factor: 47.728

3.  Capsid structure and dynamics of a human rhinovirus probed by hydrogen exchange mass spectrometry.

Authors:  Lintao Wang; David L Smith
Journal:  Protein Sci       Date:  2005-05-09       Impact factor: 6.725

4.  Hydrogen exchange reveals Hsp104 architecture, structural dynamics, and energetics in physiological solution.

Authors:  Xiang Ye; Jiabei Lin; Leland Mayne; James Shorter; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-27       Impact factor: 11.205

5.  High-speed and high-resolution UPLC separation at zero degrees Celsius.

Authors:  Thomas E Wales; Keith E Fadgen; Geoff C Gerhardt; John R Engen
Journal:  Anal Chem       Date:  2008-08-02       Impact factor: 6.986

Review 6.  Single-particle cryo-EM-How did it get here and where will it go.

Authors:  Yifan Cheng
Journal:  Science       Date:  2018-08-31       Impact factor: 47.728

7.  Tolloid cleavage activates latent GDF8 by priming the pro-complex for dissociation.

Authors:  Viet Q Le; Roxana E Iacob; Yuan Tian; William McConaughy; Justin Jackson; Yang Su; Bo Zhao; John R Engen; Michelle Pirruccello-Straub; Timothy A Springer
Journal:  EMBO J       Date:  2018-01-17       Impact factor: 11.598

8.  Ion mobility adds an additional dimension to mass spectrometric analysis of solution-phase hydrogen/deuterium exchange.

Authors:  Roxana E Iacob; James P Murphy; John R Engen
Journal:  Rapid Commun Mass Spectrom       Date:  2008-09       Impact factor: 2.586

9.  Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome.

Authors:  Sarah V Faull; Andy M C Lau; Chloe Martens; Zainab Ahdash; Kjetil Hansen; Hugo Yebenes; Carla Schmidt; Fabienne Beuron; Nora B Cronin; Edward P Morris; Argyris Politis
Journal:  Nat Commun       Date:  2019-08-23       Impact factor: 14.919

Review 10.  A primer to single-particle cryo-electron microscopy.

Authors:  Yifan Cheng; Nikolaus Grigorieff; Pawel A Penczek; Thomas Walz
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

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  5 in total

Review 1.  Advances in Hydrogen/Deuterium Exchange Mass Spectrometry and the Pursuit of Challenging Biological Systems.

Authors:  Ellie I James; Taylor A Murphree; Clint Vorauer; John R Engen; Miklos Guttman
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

Review 2.  Computational Structure Prediction for Antibody-Antigen Complexes From Hydrogen-Deuterium Exchange Mass Spectrometry: Challenges and Outlook.

Authors:  Minh H Tran; Clara T Schoeder; Kevin L Schey; Jens Meiler
Journal:  Front Immunol       Date:  2022-05-26       Impact factor: 8.786

3.  Dynamics of protein kinases and pseudokinases by HDX-MS.

Authors:  Joshua B Sheetz; Mark A Lemmon; Yuko Tsutsui
Journal:  Methods Enzymol       Date:  2022-04-08       Impact factor: 1.682

Review 4.  Mass Spectrometry Methods for Measuring Protein Stability.

Authors:  Daniel D Vallejo; Carolina Rojas Ramírez; Kristine F Parson; Yilin Han; Varun V Gadkari; Brandon T Ruotolo
Journal:  Chem Rev       Date:  2022-03-22       Impact factor: 72.087

5.  A neutralizing epitope on the SD1 domain of SARS-CoV-2 spike targeted following infection and vaccination.

Authors:  Jeffrey Seow; Hataf Khan; Annachiara Rosa; Valeria Calvaresi; Carl Graham; Suzanne Pickering; Valerie E Pye; Nora B Cronin; Isabella Huettner; Michael H Malim; Argyris Politis; Peter Cherepanov; Katie J Doores
Journal:  Cell Rep       Date:  2022-08-11       Impact factor: 9.995

  5 in total

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