| Literature DB >> 32485892 |
Ihsan A Shehadi1, Fatima-Azzahra Delmani2, Areej M Jaber3, Hana Hammad4, Murad A AlDamen3, Raed A Al-Qawasmeh1,3, Monther A Khanfar3.
Abstract
Four new complexes derived from adamantly containingEntities:
Keywords: 2-pyridyl adamantanhydrazone; antitumor; crystal structure; hydrazone complexes
Mesh:
Substances:
Year: 2020 PMID: 32485892 PMCID: PMC7321243 DOI: 10.3390/molecules25112530
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Synthesis of the ligand APH.
Scheme 2Synthesis of the complexes 1–4. All reactions where performed under refluxing condition in ethanol.
Selected vibrational bands (cm−1) of the ligand and its complexes.
| Compound | υ (C=O) | υ (C=N) | υ (C=N)PY |
|---|---|---|---|
| APH | 1651 (s) | 1546 (s) | 624 (m) |
| 1764 * | 1600 * | 636 * | |
| 1757 *# | 1601 *# | 633 *# | |
| 1 | 1588 (s) | 1615, 1527 (s) | 684 (m) |
| 1757 (calc′d) * | 1657, 1600 (calc′d) * | 761 (calc′d) * | |
| 1766 (calc′d) ** | 1664, 1605 (calc′d) | 767 (calc′d) | |
| 2 | 1146 (s) υ(C–O)coor | 1515 (s) | 677 (m) |
| 1145 * | 1512 * | 683 * | |
| 3 | 1608 (s) | 1523 (s) | 670 (m) |
| 4 | 1644 (s) | 1529 (s) | 640 (m) |
| 1666 * | 1532 * | 647 * |
* DFT calculated bands with basis set 6–311 + G(2d, 1p); ** DFT calculated bands with basis DefTZVP; # C=O group is staggered with adamantyl moieties.
Figure 1Electrostatic potential (ESP) for complex 1a (a) and 1b (b), where red presents the Mulliken negative charge distribution and green represents the positive charge distribution.
Figure 2Presentation of the HOMO-LUMO atomic orbital for complex 1a and complex 1b, which are obtained at 6–311 + G(2d, p)/B3LYP level of theory (a) HOMO + 1, HOMO, LUMO, and LUMO − 1 for complex 1a (b) HOMO + 1, HOMO, LUMO, and LUMO − 1 for complex 1b.
Figure 3Molecular units of APH show two different crystallographic molecules in the unit cell. Ellipsoids are drawn at the 30% probability level. The numbered molecule is symmetrically equivalent to the other.
Crystallographic and refinement data for APH and 1.
| APH | 1 | |
|---|---|---|
| Chemical formula | C17H23N3O2 | C18H19Cl5CuN3O |
| Formula weight | 301.38 | 534.15 |
| Crystal system | monoclinic | Triclinic |
| Space group | P21/c | Pī |
| Z | 8 | 2 |
| a (Å) | 38.328(3) | 6.4038(13) |
| b (Å) | 6.9156(5) | 9.676(3) |
| c (Å) | 11.9183(12) | 18.706(4) |
| α(°) | 90 | 76.86(2) |
| β (°) | 95.099(10) | 86.369(17) |
| γ (°) | 90 | 81.46(2) |
| V (Å3) | 3146.6(5) | 1115.7(5) |
| Density (Mg/m3) | 1.272 | 1.590 |
| Absorption coefficient (mm−1) | 0.085 | 1.592 |
| F(000) | 1296.0 | 540.0 |
| 2Ѳ Range for data collection (°) | 5.89–50.05 | 6.44–50.1 |
| Reflections collected | 13,020 | 6883 |
| Independent reflections (Rint) | 5557 (0.0673) | 3948 (0.0352) |
| Goodness-of-fit, F2 | 1.052 | 1.035 |
| R indices (all data) | R1 = 0.1943; | R1 = 0.0878; |
| Final R indices [I > 2σ(I)] | R1 = 0.0893; | R1 = 0.0584; |
| Largest difference in peak and hole (e Å−3) | 0.23 and −0.25 | 0.60 and −0.65 |
Figure 4Molecular plot of APH shows the different intermolecular interactions between APH and water moieties. Only one asymmetric unit interaction is shown, as the other unit is symmetrically equivalent.
Figure 5The packing diagram structures of APH with hydrogen bonds are shown as dotted lines.
Figure 6Thermal ellipsoid plot for the two possible disorder orientations in the adamantyl moiety (a) and (b) of 1, drawn at the 30% probability level, with atomic labeling and numbering schemes. The crystalline solvent (CHCl3) and the hydrogen atoms on adamantyl have been omitted for clarity.
Selected bond lengths (Å) and angles [°] for 1.
| Bond Distances | |||
|---|---|---|---|
| Cu1–Cl2 | 2.460(2) | Cu1–Cl1 | 2.212(2) |
| Cu1–N2 | 1.967(4) | Cu1–O1 | 2.065(4) |
| Cu1–N1 | 2.026(5) | N3–N2 | 1.364(6) |
| N3–C8 | 1.346(7) | N1–C6 | 1.328(7) |
| N1–C2 | 1.349(6) | C8–O1 | 1.239(6) |
|
| |||
| Cl1–Cu1–Cl2 | 101.79(6) | N2–Cu1–Cl2 | 96.26(14) |
| N2–Cu1–Cl1 | 161.85(14) | N2–Cu1–O1 | 77.12(16) |
| N2–Cu1–N1 | 78.52(16) | O1–Cu1–Cl2 | 94.45(13) |
| O1–Cu1–Cl1 | 99.42(11) | N1–Cu1–Cl2 | 104.39(14) |
| N1–Cu1–Cl1 | 98.58(13) | N1–Cu1–O1 | 150.58(16) |
* calculated on basis set used 6–311 + G(2d, 1p); ** calculated on basis used DefTZVP.
Figure 7Packing diagram along c-axis showing the intermolecular interactions in 1, the hydrogen atoms, disorder in adamantly and crystallization solvents were excluded for clarity purposes.
The effect of newly synthesized complexes 1, 2, 3 and 4, derived from adamantyl containing a hydrazine (APH) ligand on the viability of six cancer cell lines (MCF7, T47D, MDA-MB-231, PC3, DU145, and Caco-2) after 72 h of incubation. Doxorubicin is used as a positive control. The data are represented as percentage of growth inhibition ± SD.
| Compound No | Concentration | MCF7 | T47D | MDA-MB-231 | PC3 | DU145 | Caco-2 |
|---|---|---|---|---|---|---|---|
|
| 12.5 | 2.66 ± 0.20 | 5.39 ± 0.46 | 5.90 ± 2.12 | 15.82 ± 6.67 | 24.15 ± 0.94 | 17.17 ± 1.50 |
| 50 | 13.68 ± 1.87 | 21.98 ± 3.66 | 22.76 ± 3.01 | 19.99 ± 0.53 | 46.39 ± 2.78 | 43.62 ± 1.39 | |
|
| 12.5 | 15.33 ± 0.58 | 28.32 ± 1.40 | 32.24 ± 3.84 | 56.74 ± 4.52 | 25.30 ± 3.96 | 65.06 ± 1.37 |
| 50 | 93.30 ± 1.20 | 88.60 ± 1.17 | 88.60 ± 1.17 | 89.88 ± 0.39 | 89.85 ± 0.73 | 87.06 ± 1.57 | |
|
| 12.5 | 33.34 ± 4.60 | 22.64 ± 5.04 | 30.78 ± 1.87 | 40.67 ± 1.32 | 49.19 ± 2.98 | 74.89 ± 1.58 |
| 50 | 89.35 ± 1.22 | 86.03 ± 0.99 | 84.52 ± 2.54 | 88.60 ± 0.44 | 87.78 ± 1.32 | 85.22 ± 0.65 | |
|
| 12.5 | 17.32 ± 1.63 | 11.33 ± 1.84 | 18.43 ± 2.01 | 32.78 ± 2.63 | 30.28 ± 3.93 | 15.90 ± 1.87 |
| 50 | 37.29 ± 2.71 | 28.99 ± 4.34 | 44.78 ± 2.10 | 62.47 ± 0.14 | 61.71 ± 2.09 | 64.28 ± 2.78 | |
|
| 12.5 | 6.86 ± 3.40 | 7.21 ± 3.66 | 8.62 ± 1.49 | 10.76 ± 1.02 | 28.87 ± 3.87 | 20.39 ± 5.74 |
| 50 | 64.83 ± 1.18 | 25.26 ± 7.97 | 32.31 ± 1.95 | 84.93 ± 0.53 | 71.62 ± 1.46 | 60.32 ± 1.43 | |
| Doxorubicin | 12.5 | 63.43 ± 1.34 | 47.81 ± 4.18 | 65.68 ± 0.12 | 63.99 ± 0.46 | 53.53 ± 1.41 | 35.41 ± 2.16 |
| 50 | 72.23 ± 1.08 | 54.58 ± 2.23 | 71.52 ± 1.18 | 67.61 ± 0.47 | 52.12 ± 2.12 | 41.06 ± 3.21 |
Selected bond lengths (Å) and angles (°) for ligand APH.
| Bond Distances | |||
|---|---|---|---|
| C2–C7 | 1.462(7) | C2–N1 | 1.339(6) |
| C2–C3 | 1.401(6) | N2–C7 | 1.271(6) |
| N2–N3 | 1.384(5) | N3A–C8A | 1.358(6) |
| N3–C8 | 1.338(6) | C2A–C3A | 1.362(7) |
| N1–C6 | 1.341(6) | C8A–O1A | 1.215(5) |
| C8–C9 | 1.521(7) | N3A–N2A | 1.363(5) |
| C8–O1 | 1.229(6) | N2A–N3A | 1.362(6) |
| Angles | |||
| C8–N3–N2 | 117.6(4) | O1–C8–N3 | 122.3(5) |
| C7–N2–N3 | 116.6(5) | O1–C8–C9 | 119.4(5) |
| N1–C2–C7 | 115.0(5) | O1A–C8A–C9A | 121.1(5) |
| O1A–C8A–N3A | 121.4(5) | C7A–N2A–N3A | 118.0(4) |
Some important intermolecular interactions in APH.
| Donor-H…Acceptor | D-H | H…A | D…A | D-H…A | |
|---|---|---|---|---|---|
| N3A-H3A…O2W | x,1/2 − y,1/2 + z | 0.86 | 2.07 | 2.8697(3) | 155 |
| N3-H3…O1W | x, 3/2 − y,1/2 + z | 0.86 | 2.05 | 2.8557(3) | 156 |
| O1W-H1WA…N1 | x, 3/2 − y,1/2 + z | 0.85 | 2.06 | 2.8669(3) | 158 |
| O2W-H2WA…N1A | x,1/2 + y,1/2 − z | 0.70 | 2.38(6) | 2.8799(3) | 156 |
| O2W-H2WB…O1A | 0.85 | 2.07(7) | 2.8943(3) | 124 | |
| O1W-H1WB…O1 | 0.85 | 2.07(6) | 2.9175(8) | 176 |