| Literature DB >> 32481666 |
Birgit Grill1, Maximilian Glänzer1, Helmut Schwab1, Kerstin Steiner1, Daniel Pienaar2, Dean Brady2, Kai Donsbach3, Margit Winkler1,4.
Abstract
Nitrile hydratases (NHase) catalyze the hydration of nitriles to the corresponding amides. We report on the heterologous expression of various nitrile hydratases. Some of these enzymes have been investigated by others and us before, but sixteen target proteins represent novel sequences. Of 21 target sequences, 4 iron and 16 cobalt containing proteins were functionally expressed from Escherichia coli BL21 (DE3) Gold. Cell free extracts were used for activity profiling and basic characterization of the NHases using the typical NHase substrate methacrylonitrile. Co-type NHases are more tolerant to high pH than Fe-type NHases. A screening for activity on three structurally diverse nitriles was carried out. Two novel Co-dependent NHases from Afipia broomeae and Roseobacter sp. and a new Fe-type NHase from Gordonia hydrophobica were very well expressed and hydrated methacrylonitrile, pyrazine-carbonitrile, and 3-amino-3-(p-toluoyl)propanenitrile. The Co-dependent NHases from Caballeronia jiangsuensis and Microvirga lotononidis, as well as two Fe-dependent NHases from Pseudomonades, were-in addition-able to produce the amide from cinnamonitrile. Summarizing, seven so far uncharacterized NHases are described to be promising biocatalysts.Entities:
Keywords: active pharmaceutical ingredient.; amide; biocatalysis; metalloprotein; nitrile; nitrile hydratase (NHase); non-corrinoid cobalt; non-heme iron
Mesh:
Substances:
Year: 2020 PMID: 32481666 PMCID: PMC7321127 DOI: 10.3390/molecules25112521
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1(a) Reaction scheme; (b) substrates investigated in this study.
Figure 2Phylogenetic relationship of nitrile hydratase (NHase) α-subunits based on a protein distance analysis with T-COFFEE (Version_11.00.d625267) and visualization with iTOL (Version 5.5.1) [12]. Rhodococcus erythropolis amidase (Uniprot: P22984.2) served as the outgroup. Iron-type NHases are displayed in green, cobalt-type NHases in red.
Screening cell free extracts for nitrile hydratase activity towards hydrolysis of methacrylonitrile.
| NHase | Estimated NHase Content in CFE [mg/mL] | Activity[µmol min−1 mg−1]1 | Specific Activity [µmol min−1 mg−1]2 |
|---|---|---|---|
| Fe-type | <0.1 | 3 | 0 |
| Fe-type | 3.4 | 18 | 55 |
| Fe-type | 2.9 | 182 | 615 |
| Fe-type | 1.9 | 52 | 313 |
| Fe-type | 2.9 | 248 | 605 |
| Co-type | 1.6 | 14 | 53 |
| Co-type | 0.8 | 3 | 37 |
| Co-type | 0.1 | 2 | 14 |
| Co-type | 0.1 | 4 | 20 |
| Co-type | 2.9 | 23 | 88 |
| Co-type | 3.4 | 118 | 336 |
| Co-type | 2.9 | 165 | 613 |
| Co-type | 3.9 | 30 | 98 |
| Co-type | 1.0 | 62 | 505 |
| Co-type | 1.7 | 1 | 5 |
| Co-type | 1.2 | 41 | 243 |
| Co-type | 0.4 | 0 | 0 |
| Co-type | 4.2 | 45 | 138 |
| Co-type | 2.0 | 0 | 0 |
| Co-type | 1.7 | 1 | 3 |
| Co-type | 1.5 | 8 | 54 |
1 Activity relates to total protein content of the cell free extract (CFE). 2 Specific activity calculated on basis of estimated NHase content in CFE. 3 Addition of 1 mM of CoCl2 at induction.
Figure 3Activities of NHase CFEs for MAN hydrolysis at different pH values and 25 °C. Citrate-phosphate buffer pH 5–6, sodium phosphate buffer pH 7–8, Tris-HCl buffer pH 8.5, carbonate buffer pH 9–10. CtNHase: filled dark red circles. KoNHase: filled orange squares. NaNHase: filled yellow triangles. GhNHase: green rhombs. PkNHase: light green circles. PmNHase: blue crosses. ReNHase: dark blue triangles.
Figure 4Residual activities of NHase CFEs for MAN hydrolysis at 25 °C. (a) After incubation at 37 °C in buffer at pH 8.0; (b) after incubation at 50 °C at pH 8.0. CtNHase: filled dark red circles. KoNHase: filled orange squares. NaNHase: filled yellow triangles. GhNHase: green rhombs, dashed line. PkNHase: light green circles, dashed line. PmNHase: blue crosses, dashed line. ReNHase: dark blue triangles, dashed line.
Figure 5(a) Amide formation from 5 mM 2a with NHase CFEs (1:200 dilution) in 100 mM KH2PO4 buffer at pH 7.2 and 25 °C. Reaction time 5 min. NaNHase was not included. Calculation was based on area normalization. All omitted NHases were inactive for 2a hydration under these conditions. Black: Co and Grey Fe-dependent NHases; (b) Relative activities of NHases. Red tones: Co- and Green/Blue Fe-dependent NHases.
Figure 6Amide formation from 5 mM substrate. Reaction time 5 min. Red tones: Co- and Green/Blue Fe-dependent NHases. (a) 3a with NHase CFEs (1:200 dilution) in 100 mM KH2PO4 buffer at pH 7.2 and 25 °C. All missing NHases were inactive for 3a hydration under these conditions. (b) 4a with NHase CFEs (1:100 dilution) in 273 mM Na2HPO4/72 mM NaH2PO4 at pH 7.5. All omitted NHases were inactive for 4a hydration under these conditions.