Literature DB >> 32470558

Out-of-Register Parallel β-Sheets and Antiparallel β-Sheets Coexist in 150-kDa Oligomers Formed by Amyloid-β(1-42).

Yuan Gao1, Cong Guo2, Jens O Watzlawik3, Peter S Randolph4, Elizabeth J Lee1, Danting Huang1, Scott M Stagg5, Huan-Xiang Zhou6, Terrone L Rosenberry3, Anant K Paravastu7.   

Abstract

We present solid-state NMR measurements of β-strand secondary structure and inter-strand organization within a 150-kDa oligomeric aggregate of the 42-residue variant of the Alzheimer's amyloid-β peptide (Aβ(1-42)). We build upon our previous report of a β-strand spanned by residues 30-42, which arranges into an antiparallel β-sheet. New results presented here indicate that there is a second β-strand formed by residues 11-24. Contrary to expectations, NMR data indicate that this second β-strand is organized into a parallel β-sheet despite the co-existence of an antiparallel β-sheet in the same structure. In addition, the in-register parallel β-sheet commonly observed for amyloid fibril structure does not apply to residues 11-24 in the 150-kDa oligomer. Rather, we present evidence for an inter-strand registry shift of three residues that likely alternate in direction between adjacent molecules along the β-sheet. We corroborated this unexpected scheme for β-strand organization using multiple two-dimensional NMR and 13C-13C dipolar recoupling experiments. Our findings indicate a previously unknown assembly pathway and inspire a suggestion as to why this aggregate does not grow to larger sizes.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Alzheimer's disease; amyloid-β oligomer; out-of-register parallel β-sheet; peptide aggregation pathways; solid-state NMR

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Year:  2020        PMID: 32470558      PMCID: PMC7387221          DOI: 10.1016/j.jmb.2020.05.018

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  73 in total

1.  Solid state NMR reveals a pH-dependent antiparallel beta-sheet registry in fibrils formed by a beta-amyloid peptide.

Authors:  A T Petkova; G Buntkowsky; F Dyda; R D Leapman; W-M Yau; R Tycko
Journal:  J Mol Biol       Date:  2004-01-02       Impact factor: 5.469

2.  Toxic fibrillar oligomers of amyloid-β have cross-β structure.

Authors:  James C Stroud; Cong Liu; Poh K Teng; David Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-30       Impact factor: 11.205

3.  Solution state characterization of amyloid beta-derived diffusible ligands.

Authors:  Robert W Hepler; Karen M Grimm; Deborah D Nahas; Robert Breese; Elizabeth Chen Dodson; Paul Acton; Paul M Keller; Mark Yeager; Hui Wang; Paul Shughrue; Gene Kinney; Joseph G Joyce
Journal:  Biochemistry       Date:  2006-12-06       Impact factor: 3.162

4.  Structural characterization of a soluble amyloid beta-peptide oligomer.

Authors:  Liping Yu; Rohinton Edalji; John E Harlan; Thomas F Holzman; Ana Pereda Lopez; Boris Labkovsky; Heinz Hillen; Stefan Barghorn; Ulrich Ebert; Paul L Richardson; Laura Miesbauer; Larry Solomon; Diane Bartley; Karl Walter; Robert W Johnson; Philip J Hajduk; Edward T Olejniczak
Journal:  Biochemistry       Date:  2009-03-10       Impact factor: 3.162

5.  Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils.

Authors:  Michael T Colvin; Robert Silvers; Qing Zhe Ni; Thach V Can; Ivan Sergeyev; Melanie Rosay; Kevin J Donovan; Brian Michael; Joseph Wall; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2016-07-14       Impact factor: 15.419

Review 6.  Molecular Structure of Aggregated Amyloid-β: Insights from Solid-State Nuclear Magnetic Resonance.

Authors:  Robert Tycko
Journal:  Cold Spring Harb Perspect Med       Date:  2016-08-01       Impact factor: 6.915

Review 7.  Amyloid β oligomers (AβOs) in Alzheimer's disease.

Authors:  Barbara Mroczko; Magdalena Groblewska; Ala Litman-Zawadzka; Johannes Kornhuber; Piotr Lewczuk
Journal:  J Neural Transm (Vienna)       Date:  2017-12-01       Impact factor: 3.575

8.  Solid-state NMR analysis of the β-strand orientation of the protofibrils of amyloid β-protein.

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Journal:  Biochem Biophys Res Commun       Date:  2012-11-03       Impact factor: 3.575

9.  Amyloid-β protofibrils: size, morphology and synaptotoxicity of an engineered mimic.

Authors:  Anatoly Dubnovitsky; Anders Sandberg; M Mahafuzur Rahman; Iryna Benilova; Christofer Lendel; Torleif Härd
Journal:  PLoS One       Date:  2013-07-02       Impact factor: 3.240

10.  Proliferation of amyloid-β42 aggregates occurs through a secondary nucleation mechanism.

Authors:  Samuel I A Cohen; Sara Linse; Leila M Luheshi; Erik Hellstrand; Duncan A White; Luke Rajah; Daniel E Otzen; Michele Vendruscolo; Christopher M Dobson; Tuomas P J Knowles
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-23       Impact factor: 11.205

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2.  The amyloid concentric β-barrel hypothesis: Models of amyloid beta 42 oligomers and annular protofibrils.

Authors:  Stewart R Durell; Rakez Kayed; H Robert Guy
Journal:  Proteins       Date:  2022-01-25

3.  Glucosamine and Its Analogues as Modulators of Amyloid-β Toxicity.

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Journal:  ACS Med Chem Lett       Date:  2021-03-24       Impact factor: 4.345

4.  Segmental structural dynamics in Aβ42 globulomers.

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Journal:  Biochem Biophys Res Commun       Date:  2021-02-03       Impact factor: 3.575

5.  Alzheimer's Aβ42 and Aβ40 form mixed oligomers with direct molecular interactions.

Authors:  Lei Gu; Zhefeng Guo
Journal:  Biochem Biophys Res Commun       Date:  2020-12-01       Impact factor: 3.575

6.  Visualizing and trapping transient oligomers in amyloid assembly pathways.

Authors:  Emma E Cawood; Theodoros K Karamanos; Andrew J Wilson; Sheena E Radford
Journal:  Biophys Chem       Date:  2020-11-10       Impact factor: 2.352

7.  Lipid membranes induce structural conversion from amyloid oligomers to fibrils.

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Journal:  Biochem Biophys Res Commun       Date:  2021-04-14       Impact factor: 3.322

8.  Characterization of Homogeneous and Heterogeneous Amyloid-β42 Oligomer Preparations with Biochemical Methods and Infrared Spectroscopy Reveals a Correlation between Infrared Spectrum and Oligomer Size.

Authors:  Faraz Vosough; Andreas Barth
Journal:  ACS Chem Neurosci       Date:  2021-01-17       Impact factor: 4.418

Review 9.  Natural Products Targeting Amyloid Beta in Alzheimer's Disease.

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10.  Structural Arrangement within a Peptide Fibril Derived from the Glaucoma-Associated Myocilin Olfactomedin Domain.

Authors:  Yuan Gao; Emily G Saccuzzo; Shannon E Hill; Dustin J E Huard; Alicia S Robang; Raquel L Lieberman; Anant K Paravastu
Journal:  J Phys Chem B       Date:  2021-03-08       Impact factor: 2.991

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