Literature DB >> 14659754

Solid state NMR reveals a pH-dependent antiparallel beta-sheet registry in fibrils formed by a beta-amyloid peptide.

A T Petkova1, G Buntkowsky, F Dyda, R D Leapman, W-M Yau, R Tycko.   

Abstract

We report solid state nuclear magnetic resonance (NMR) measurements that probe the supramolecular organization of beta-sheets in the cross-beta motif of amyloid fibrils formed by residues 11-25 of the beta-amyloid peptide associated with Alzheimer's disease (Abeta(11-25)). Fibrils were prepared at pH 7.4 and pH 2.4. The solid state NMR data indicate that the central hydrophobic segment of Abeta(11-25) (sequence LVFFA) adopts a beta-strand conformation and participates in antiparallel beta-sheets at both pH values, but that the registry of intermolecular hydrogen bonds is pH-dependent. Moreover, both registries determined for Abeta(11-25) fibrils are different from the hydrogen bond registry in the antiparallel beta-sheets of Abeta(16-22) fibrils at pH 7.4 determined in earlier solid state NMR studies. In all three cases, the hydrogen bond registry is highly ordered, with no detectable "registry-shift" defects. These results suggest that the supramolecular organization of beta-sheets in amyloid fibrils is determined by a sensitive balance of multiple side-chain-side-chain interactions. Recent structural models for Abeta(11-25) fibrils based on X-ray fiber diffraction data are inconsistent with the solid state NMR data at both pH values.

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Year:  2004        PMID: 14659754     DOI: 10.1016/j.jmb.2003.10.044

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  107 in total

1.  The α-helical C-terminal domain of full-length recombinant PrP converts to an in-register parallel β-sheet structure in PrP fibrils: evidence from solid state nuclear magnetic resonance.

Authors:  Robert Tycko; Regina Savtchenko; Valeriy G Ostapchenko; Natallia Makarava; Ilia V Baskakov
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

2.  Solid-state NMR spectroscopy of protein complexes.

Authors:  Shangjin Sun; Yun Han; Sivakumar Paramasivam; Si Yan; Amanda E Siglin; John C Williams; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2012

3.  Antiparallel β-sheet architecture in Iowa-mutant β-amyloid fibrils.

Authors:  Wei Qiang; Wai-Ming Yau; Yongquan Luo; Mark P Mattson; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-08       Impact factor: 11.205

4.  Oligomerization of amyloid Abeta16-22 peptides using hydrogen bonds and hydrophobicity forces.

Authors:  Giorgio Favrin; Anders Irbäck; Sandipan Mohanty
Journal:  Biophys J       Date:  2004-09-17       Impact factor: 4.033

5.  Sampling the self-assembly pathways of KFFE hexamers.

Authors:  Guanghong Wei; Normand Mousseau; Philippe Derreumaux
Journal:  Biophys J       Date:  2004-09-17       Impact factor: 4.033

6.  Segmental polymorphism in a functional amyloid.

Authors:  Kan-Nian Hu; Ryan P McGlinchey; Reed B Wickner; Robert Tycko
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

7.  Polymorphic C-terminal beta-sheet interactions determine the formation of fibril or amyloid beta-derived diffusible ligand-like globulomer for the Alzheimer Abeta42 dodecamer.

Authors:  Buyong Ma; Ruth Nussinov
Journal:  J Biol Chem       Date:  2010-09-16       Impact factor: 5.157

8.  On the pH-optimum of activity and stability of proteins.

Authors:  Kemper Talley; Emil Alexov
Journal:  Proteins       Date:  2010-09

Review 9.  Nanoimaging for prion related diseases.

Authors:  Alexey V Krasnoslobodtsev; Alexander M Portillo; Tanja Deckert-Gaudig; Volker Deckert; Yuri L Lyubchenko
Journal:  Prion       Date:  2010-10-23       Impact factor: 3.931

10.  Parallel beta-sheets and polar zippers in amyloid fibrils formed by residues 10-39 of the yeast prion protein Ure2p.

Authors:  Jerry C C Chan; Nathan A Oyler; Wai-Ming Yau; Robert Tycko
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

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