Literature DB >> 32467386

The human tumor microbiome is composed of tumor type-specific intracellular bacteria.

Deborah Nejman1, Ilana Livyatan1,2, Garold Fuks3, Noam Shental4, Ravid Straussman5, Nancy Gavert1, Yaara Zwang1, Leore T Geller1, Aviva Rotter-Maskowitz1, Roi Weiser6,7, Giuseppe Mallel1, Elinor Gigi1, Arnon Meltser1, Gavin M Douglas8, Iris Kamer9, Vancheswaran Gopalakrishnan10, Tali Dadosh11, Smadar Levin-Zaidman11, Sofia Avnet12, Tehila Atlan13, Zachary A Cooper14, Reetakshi Arora10, Alexandria P Cogdill15, Md Abdul Wadud Khan10, Gabriel Ologun10, Yuval Bussi1,2,16, Adina Weinberger1,2, Maya Lotan-Pompan1,2, Ofra Golani17, Gili Perry18, Merav Rokah19, Keren Bahar-Shany18, Elisa A Rozeman20, Christian U Blank20, Anat Ronai21, Ron Shaoul21, Amnon Amit22,23, Tatiana Dorfman24,25, Ran Kremer26, Zvi R Cohen7,27, Sagi Harnof7,28, Tali Siegal29, Einav Yehuda-Shnaidman30, Einav Nili Gal-Yam31, Hagit Shapira30, Nicola Baldini12,32, Morgan G I Langille8,33, Alon Ben-Nun7,19, Bella Kaufman7,9, Aviram Nissan34, Talia Golan7,9, Maya Dadiani18, Keren Levanon7,18, Jair Bar7,9, Shlomit Yust-Katz7,29, Iris Barshack7,35, Daniel S Peeper36, Dan J Raz37, Eran Segal1,2, Jennifer A Wargo10,15, Judith Sandbank30.   

Abstract

Bacteria were first detected in human tumors more than 100 years ago, but the characterization of the tumor microbiome has remained challenging because of its low biomass. We undertook a comprehensive analysis of the tumor microbiome, studying 1526 tumors and their adjacent normal tissues across seven cancer types, including breast, lung, ovary, pancreas, melanoma, bone, and brain tumors. We found that each tumor type has a distinct microbiome composition and that breast cancer has a particularly rich and diverse microbiome. The intratumor bacteria are mostly intracellular and are present in both cancer and immune cells. We also noted correlations between intratumor bacteria or their predicted functions with tumor types and subtypes, patients' smoking status, and the response to immunotherapy.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32467386      PMCID: PMC7757858          DOI: 10.1126/science.aay9189

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  72 in total

1.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

Review 2.  Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations.

Authors:  Raphael Eisenhofer; Jeremiah J Minich; Clarisse Marotz; Alan Cooper; Rob Knight; Laura S Weyrich
Journal:  Trends Microbiol       Date:  2018-11-26       Impact factor: 17.079

3.  Gavage of Fecal Samples From Patients With Colorectal Cancer Promotes Intestinal Carcinogenesis in Germ-Free and Conventional Mice.

Authors:  Sunny H Wong; Liuyang Zhao; Xiang Zhang; Geicho Nakatsu; Juqiang Han; Weiqi Xu; Xue Xiao; Thomas N Y Kwong; Ho Tsoi; William K K Wu; Benhua Zeng; Francis K L Chan; Joseph J Y Sung; Hong Wei; Jun Yu
Journal:  Gastroenterology       Date:  2017-08-18       Impact factor: 22.682

4.  Efficient comparative phylogenetics on large trees.

Authors:  Stilianos Louca; Michael Doebeli
Journal:  Bioinformatics       Date:  2018-03-15       Impact factor: 6.937

Review 5.  The microbiome, cancer, and cancer therapy.

Authors:  Beth A Helmink; M A Wadud Khan; Amanda Hermann; Vancheswaran Gopalakrishnan; Jennifer A Wargo
Journal:  Nat Med       Date:  2019-03-06       Impact factor: 53.440

6.  Deep microbial analysis of multiple placentas shows no evidence for a placental microbiome.

Authors:  A A Kuperman; A Zimmerman; S Hamadia; O Ziv; V Gurevich; B Fichtman; N Gavert; R Straussman; H Rechnitzer; M Barzilay; S Shvalb; J Bornstein; I Ben-Shachar; S Yagel; I Haviv; O Koren
Journal:  BJOG       Date:  2019-08-24       Impact factor: 6.531

7.  Bacterial and fungal microflora in surgically removed lung cancer samples.

Authors:  Panagiotis Apostolou; Aggeliki Tsantsaridou; Ioannis Papasotiriou; Maria Toloudi; Marina Chatziioannou; Gregory Giamouzis
Journal:  J Cardiothorac Surg       Date:  2011-10-14       Impact factor: 1.637

8.  Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota.

Authors:  Abigail P Lauder; Aoife M Roche; Scott Sherrill-Mix; Aubrey Bailey; Alice L Laughlin; Kyle Bittinger; Rita Leite; Michal A Elovitz; Samuel Parry; Frederic D Bushman
Journal:  Microbiome       Date:  2016-06-23       Impact factor: 14.650

9.  (D)-Amino acid chemical reporters reveal peptidoglycan dynamics of an intracellular pathogen.

Authors:  M Sloan Siegrist; Sarah Whiteside; John C Jewett; Arjun Aditham; Felipe Cava; Carolyn R Bertozzi
Journal:  ACS Chem Biol       Date:  2013-01-11       Impact factor: 5.100

10.  Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling.

Authors:  Jennifer T Lau; Fiona J Whelan; Isiri Herath; Christine H Lee; Stephen M Collins; Premysl Bercik; Michael G Surette
Journal:  Genome Med       Date:  2016-07-01       Impact factor: 11.117

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  263 in total

1.  Bacterial peptides presented on tumour cells could be immunotherapy targets.

Authors:  Angelika B Riemer
Journal:  Nature       Date:  2021-04       Impact factor: 49.962

Review 2.  Considerations for designing preclinical cancer immune nanomedicine studies.

Authors:  Wen Jiang; Yifan Wang; Jennifer A Wargo; Frederick F Lang; Betty Y S Kim
Journal:  Nat Nanotechnol       Date:  2020-12-21       Impact factor: 39.213

Review 3.  Regulation and modulation of antitumor immunity in pancreatic cancer.

Authors:  Joshua Leinwand; George Miller
Journal:  Nat Immunol       Date:  2020-08-17       Impact factor: 25.606

4.  RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum.

Authors:  Falk Ponath; Caroline Tawk; Yan Zhu; Lars Barquist; Franziska Faber; Jörg Vogel
Journal:  Nat Microbiol       Date:  2021-07-08       Impact factor: 17.745

5.  Alterations in the Duodenal Fluid Microbiome of Patients With Pancreatic Cancer.

Authors:  Shiro Kohi; Anne Macgregor-Das; Mohamad Dbouk; Takeichi Yoshida; Miguel Chuidian; Toshiya Abe; Michael Borges; Anne Marie Lennon; Eun Ji Shin; Marcia Irene Canto; Michael Goggins
Journal:  Clin Gastroenterol Hepatol       Date:  2020-11-05       Impact factor: 11.382

Review 6.  The microbiome and human cancer.

Authors:  Gregory D Sepich-Poore; Laurence Zitvogel; Ravid Straussman; Jeff Hasty; Jennifer A Wargo; Rob Knight
Journal:  Science       Date:  2021-03-26       Impact factor: 47.728

7.  Diet Alters Entero-Mammary Signaling to Regulate the Breast Microbiome and Tumorigenesis.

Authors:  David R Soto-Pantoja; Mohamed Gaber; Alana A Arnone; Steven M Bronson; Nildris Cruz-Diaz; Adam S Wilson; Kenysha Y J Clear; Manuel U Ramirez; Gregory L Kucera; Edward A Levine; Sophie A Lelièvre; Lesley Chaboub; Akiko Chiba; Hariom Yadav; Pierre-Alexandre Vidi; Katherine L Cook
Journal:  Cancer Res       Date:  2021-06-03       Impact factor: 12.701

8.  Bacteria break barrier to promote metastasis.

Authors:  Yoshitaka Murota; Christian Jobin
Journal:  Cancer Cell       Date:  2021-04-22       Impact factor: 31.743

Review 9.  Sex Differences in Glioblastoma Immunotherapy Response.

Authors:  Juyeun Lee; Kristen Kay; Katie Troike; Manmeet S Ahluwalia; Justin D Lathia
Journal:  Neuromolecular Med       Date:  2021-04-17       Impact factor: 3.843

Review 10.  Neutrophils in cancer: heterogeneous and multifaceted.

Authors:  Catherine C Hedrick; Ilaria Malanchi
Journal:  Nat Rev Immunol       Date:  2021-07-06       Impact factor: 53.106

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