| Literature DB >> 32466566 |
Klétigui Casimir Dembélé1,2,3, Thomas Mintz4, Charlotte Veyrat-Durebex5,6, Floris Chabrun2,3, Stéphanie Chupin2, Lydie Tessier2, Gilles Simard2, Daniel Henrion3, Delphine Mirebeau-Prunier2,3, Juan Manuel Chao de la Barca2,3, Pierre-Louis Tharaux4,7,8, Pascal Reynier2,3.
Abstract
Few data-driven metabolomic approaches have been reported in sickle cell disease (SCD) to date. We performed a metabo-lipidomic study on the plasma and red blood cells of a steady-state mouse model carrying the homozygous human hemoglobin SS, compared with AS and AA genotypes. Among the 188 metabolites analyzed by a targeted quantitative metabolomic approach, 153 and 129 metabolites were accurately measured in the plasma and red blood cells, respectively. Unsupervised PCAs (principal component analyses) gave good spontaneous discrimination between HbSS and controls, and supervised OPLS-DAs (orthogonal partial least squares-discriminant analyses) provided highly discriminant models. These models confirmed the well-known deregulation of nitric oxide synthesis in the HbSS genotype, involving arginine deficiency and increased levels of dimethylarginines, ornithine, and polyamines. Other discriminant metabolites were newly evidenced, such as hexoses, alpha-aminoadipate, serotonin, kynurenine, and amino acids, pointing to a glycolytic shift and to the alteration of metabolites known to be involved in nociceptive pathways. Sharp remodeling of lysophosphatidylcholines, phosphatidylcholines, and sphingomyelins was evidenced in red blood cells. Our metabolomic study provides an overview of the metabolic remodeling induced by the sickle genotype in the plasma and red blood cells, revealing a biological fingerprint of altered nitric oxide, bioenergetics and nociceptive pathways.Entities:
Keywords: lipidomics; metabolomics; nociception; sickle cell disease
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Year: 2020 PMID: 32466566 PMCID: PMC7349104 DOI: 10.3390/cells9061334
Source DB: PubMed Journal: Cells ISSN: 2073-4409 Impact factor: 6.600
Figure 1(plasma). PCA (A) and OPLS-DA (B) scatter plots obtained from the matrix of metabolites measured in the plasma from HbSS (blue circles, n = 23) and HbAS (green circles, n = 14) mice.
Figure 2(plasma). Volcano plot (pcorr vs. VIP) from the OPLS-DA model shown in Figure 1B (plasma from HbSS vs. HbAS). Only the most discriminating metabolites with high VIP values ≥ 1 are listed in the boxes. Negative pcorr values (left) indicate diminished metabolite concentrations in HbSS versus HbAS genotypes, whereas positive pcorr values (right) indicate increased metabolite concentrations in HbSS versus HbAS genotypes.
Figure 3(RBC). PCA (A) and OPLS-DA (B) scatter plots obtained from the matrix of metabolites measured in the red blood cells from HbSS (blue circles, n = 23) and HbAS (green circles, n = 14) mice.
Figure 4(RBC). Volcano plot (pcorr vs. VIP) from the OPLS-DA model shown in Figure 3B (red blood cells from HbSS vs. HbAS). Only the most discriminating metabolites with high VIP values ≥ 1 are listed in the boxes. Negative pcorr values (left) indicate diminished metabolite concentrations in HbSS versus HbAS genotypes, whereas positive pcorr values (right) indicate increased metabolite concentrations in HbSS versus HbAS genotypes.
Figure 5HbSS/HbAS signature summarization. Word clouds were calculated using metabolite VIPs to determine the size of the words, and loadings to determine the color scale, from dark green for the highest negative loadings (decreased in HbSS) and from deep red for the highest positive loadings (increased in HbSS).
Figure 6(plasma). PCA (A), OPLS-DA (B) scatter plots obtained from the matrix of metabolites measured in the plasmas from HbSS (blue circles, n = 9) and HbAA (green circles, n = 10) mice.
Figure 7(plasma). Volcano scatter plots obtained from the matrix of metabolites measured in the plasmas from HbSS (blue circles, n = 9) and HbAA (green circles, n = 10) mice. Volcano plot (pcorr vs. VIP) from the OPLS-DA model shown in B (plasma from HbSS vs. HbAA). Only the most discriminating metabolites with high VIP values ≥ 1 are listed in the boxes. Negative pcorr values (left) indicate diminished metabolite concentrations in HbSS versus HbAA genotypes, whereas positive pcorr values (right) indicate increased metabolite concentrations in HbSS versus HbAA genotypes.
Figure 8(RBC). PCA (A), OPLS-DA (B) scatter plots obtained from the matrix of metabolites measured in the red blood cells from HbSS (blue circles, n = 9) and HbAA (green circles, n = 10) mice.
Figure 9(RBC). Volcano scatter plots obtained from the matrix of metabolites measured in the red blood cells from HbSS (blue circles, n = 9) and HbAA (green circles, n = 10) mice. Volcano plot (pcorr vs. VIP) from the OPLS-DA model shown in B (red blood cells from HbSS vs. HbAA). Only the most discriminating metabolites with high VIP values ≥ 1 are listed in the boxes. Negative pcorr values (left) indicate diminished metabolite concentrations in HbSS versus HbAA genotypes, whereas positive pcorr values (right) indicate increased metabolite concentrations in HbSS versus HbAA genotypes.