| Literature DB >> 32462068 |
Christina K Hodgson1, Matthew D Krasowski1, Bradley A Ford1.
Abstract
HIV-1/2 antigen/antibody (Ag/Ab) immunoassays that detect HIV-1 and HIV-2 antibodies and HIV-1 p24 antigen are commonly used in the diagnosis of HIV-1/HIV-2 infections in human plasma/serum. Samples from patients with positive screening results require confirmation by antibody differentiation and/or HIV PCR assays. HIV screening assays are commonly reported as positive or negative based on a signal-to-cutoff (S/CO) threshold. For some HIV screening assays, the strength of the S/CO value correlates with likelihood that confirmatory testing will be positive. The data in this article provide results from two HIV Ag/Ab combination assays (Abbott Architect HIV Ag/Ab Combo Assay, a 4th generation combination assay; Bio-Rad Bioplex 2200 HIV Ag-Ab Assay, a 5th generation assay). The data include 23,331 HIV screening results, S/CO ratios, antibody differentiation or Western blot results (for samples with positive HIV screens), HIV-1 PCR results (if performed), patient location at time of testing, age, and sex. Distribution of S/CO ratios for the Bio-Rad HIV screening assay data and the distribution of S/CO values for samples with positive screening results were analyzed.Entities:
Keywords: False positive reaction; HIV-1; HIV-2; immunoassay; polymerase chain reaction; viral load
Year: 2020 PMID: 32462068 PMCID: PMC7243050 DOI: 10.1016/j.dib.2020.105707
Source DB: PubMed Journal: Data Brief ISSN: 2352-3409
Demographics of HIV testing
| Architect | Bioplex | |
|---|---|---|
| HIV screening | n = 11987 | n = 11344 |
| Inpatient | 1517 (12.7%) | 1259 (11.1%) |
| Outpatient | 10218 (85.2%) | 9790 (86.3%) |
| Emergency department | 252 (2.1%) | 295 (2.6%) |
| Obstetrics-gynecology | 2567 (21.4%) | 3555 (31.3%) |
| Family medicine | 1352 (11.3%) | 1372 (12.1%) |
| Transplant services | 867 (7.2%) | 772 (6.8%) |
| Internal medicine | 539 (4.5%) | 558 (4.9%) |
| Mean age (yrs) | 46 ± 11 | 41 ± 13 |
| Median age (yrs) | 46 | 40 |
| Male: female | 3:1 | 3:1 |
| Mean age (yrs) | 40 ± 15 | 39 ± 14 |
| Median age (yrs) | 33 | 34 |
| Male: female | 0.6 | 0.8:1 |
Performance of Architect and Bioplex HIV Ag/Ab assays
| Architect | Bioplex | Total | |
|---|---|---|---|
| n = 11987 | n = 11344 | n = 23331 | |
| Reactive screens | 52 | 58 | 110 |
| Nonreactive screens | 11935 | 11286 | 23221 |
| Confirmed positives | 22 | 27 | 49 |
| Positive Western Blot | 7 | N/A | 7 |
| HIV-1 by Multispot | 14 | 18 | 32 |
| HIV-2 by Multispot | 1 | 0 | 1 |
| HIV-1 by Geenius | N/A | 9 | 9 |
| Non-true positives (confirmation negative) | 26 | 31 | 57 |
| Confirmatory test cancelled | 4 | 0 | 4† |
| (95% CI) | 99.8% (99.7 - 99.9%) | 99.7% (99.6 - 99.8%) | 99.8% (99.7 - 99.8)% |
| (95% CI) | 45.8% (36.6 -55.4%) | 46.6% (38 -55.3%) | 46.2% (39.9 -52.7%) |
HIV-2 RNA was detected (but below the limited of quantification, <10 copies/mL) by subsequent HIV-2 PCR performed at the University of Washington (Seattle, WA) and New York State Department of Health Wadsworth Center (Albany, NY.) This sample was also screen positive on the Bioplex assay when tested as part of validation studies.
Confirmatory testing was cancelled in 4 cases for the Abbott Architect testing due to previously established HIV-1 diagnosis.
S/CO Ratio Quantitative Values for Reactive Screens
| Architect HIV Ag/Ab Combo Assay | ||
|---|---|---|
| S/CO ratio | Negative confirmation | Positive confirmation |
| n = 11 | n = 12 | |
| Median | 2 | 826 |
| Minimum | 1 | 199 |
| Maximum | 39 | 1094 |
S/CO ratios were only available for 23 of 52 Architect positive screens. A single patient with a reactive Architect result had confirmed HIV-2 infection. Initial HIV testing was performed in this patient as part of routine screening for solid organ transplant evaluation. The quantitative S/CO ratio on the Architect assay was 237.48. The sample was later tested as part of validation studies for the Bioplex assay and had an S/CO ratio of > 200 for HIV-2 Ab (<1 for the two HIV-1 discrete components). HIV-2 antibodies were detected by Multispot confirmation. HIV-2 RNA was detected although below the assay's limit of quantitation (<10 copies/mL) by real-time PCR (University of Washington Medical Center, Seattle, WA). HIV-2 RNA remained detectable at 8 and 9 months by real-time PCR but was no longer detected at 19 months from initial screening.
S/CO ratios had maximum upper limit of 200 for the Bioplex. All values above this were simply reported as > 200.
Discrete component for reactive Bioplex screens
| Reactive component (S/CO ratio ≥ 1) | HIV-1 Ab | HIV-2 Ab | HIV-1 p24 Ag | HIV-1 Ab, HIV-2 Ab | HIV-2 Ab, HIV-1 p24 Ag | HIV-1 Ab, HIV-2 Ab, HIV-1 p24 Ag |
|---|---|---|---|---|---|---|
| Confirmed positive screens (n = 27) | 27 | 0 | 0 | 0 | 0 | 0 |
| Non-true positive screens (n = 31) | 22 | 1 | 0 | 2 | 1 | 5 |
These Bioplex patterns combined cross-reactivity for HIV-1 Ab and HIV-2 Ab and are designated in the assay package insert as “undifferentiated HIV”, a result pattern uncommonly associated with actual HIV infection.
Performance with Selected S/CO Ratio Thresholds
| Abbott Architect HIV Ag/Ab Combo Assay | ||
|---|---|---|
| S/CO ratio | PPV (%) | Sensitivity (%) |
| >200 | 100% | 100% |
| >150 | 100% | 100% |
| >100 | 100% | 100% |
S/CO quantitative values were available for 23 of 52 reactive Architect screens and 58 of 58 reactive Bioplex screens.
Fig. 1Distribution of S/CO ratios for Confirmed Positives and Non-True Positive Results. Note: 19 Bioplex specimens had S/CO ratios that exceeded 200 (plotted together at 200).
Fig. 2Distribution of S/CO ratios of negative Bioplex screens.
| Subject | Medicine and Dentistry |
| Specific subject area | Pathology and Medical Technology |
| Type of data | Tables |
| How data were acquired | Retrospective chart and data review from laboratory analysis performed at an academic medical center central clinical laboratory were obtained via tools within the electronic medical record. |
| Data format | Raw and Analyzed |
| Parameters for data were collection | Retrospective data on all HIV screening and confirmatory tests was obtained from the electronic medical record (Epic, Inc.) covering the time period from January 1, 2014 through May 24, 2017. Detailed chart review was performed for all cases with positive HIV screening results except for testing for blood borne pathogen (BBP) exposures that were restricted from chart review. The project had approval from the University of Iowa Institutional Review Board. |
| Description of data collection | There were a total of 23,331 HIV screening tests performed on 19,177 (Architect 9,302, Bioplex 9,875) unique patients for clinical purposes during the retrospective analysis period. The study was a retrospective study approved by the University of Iowa Institutional Review Board (protocol # 201705802). The data collection also contains confirmatory HIV testing for positive screens. |
| Data source location | Iowa City, Iowa, United States of America |
| Data accessibility | Raw data are available in this article as 2 Supplementary files. Five tables and two figures are included within the paper. |