| Literature DB >> 32461284 |
Melissa Richard-Greenblatt1,2, Candy Rutherford2, Kathy Luinstra2, Ana María Cárdenas3,4, Xiaoli Lilly Pang5,6, Padman Jayaratne1,2, Marek Smieja7,2.
Abstract
The FecalSwab system (Copan Italia, Brescia, Italy) is a convenient alternative to bulk stool for the diagnosis of enteric pathogens. Although the U.S. Food and Drug Administration (FDA) approved for transport and culture of enteric bacterial pathogens, the FecalSwab has not been well assessed for its suitability with molecular platforms. In this study, we evaluated the FecalSwab as a specimen type for the BD Max system using the viral and bacterial enteric panels (BD Diagnostics, Baltimore, MD, USA). A total of 186 unpreserved stool specimens were collected and used to prepare matched bulk stool and FecalSwab samples. Performance was equivalent (P > 0.48) to bulk stool for all targets when 50 μl of FecalSwab specimen was loaded onto the BD Max assays. As stool specimens are often collected off-site from the clinical microbiology laboratory and require transport, we assessed the stability of stool specimens stored for up to 14 days at 4°C, 22°C, or 35°C to account for varying transportation conditions. Molecular detection for the majority of viral targets (excluding astrovirus) was unaffected (change in cycle threshold [ΔCT ] ≤ 1) by sample storage temperature over the 2-week period; however, detection of enteric bacteria was variable if specimens were not refrigerated (22°C or 35°C). By demonstrating equivalent performance to matched bulk stool and maintaining molecular detection sensitivity when stored at 4°C, we suggest that the FecalSwab is a suitable specimen type for enteropathogen diagnostics on the BD Max system.Entities:
Keywords: BD Max system; FecalSwab; enteropathogens; rectal swabs
Mesh:
Year: 2020 PMID: 32461284 PMCID: PMC7448620 DOI: 10.1128/JCM.00178-20
Source DB: PubMed Journal: J Clin Microbiol ISSN: 0095-1137 Impact factor: 5.948
FIG 1Schematic diagram for sample preparation of bulk stool (A) and FecalSwab (B) methods.
FIG 2Evaluation of various FecalSwab sample volumes (10 and 50 μl) to achieve equivalent detection to the BD Max standard-of-care (bulk stool) protocols for each EVP and EBP pathogen target. Standard of care recommends 5 μl of unpreserved stool for the EVP assay and 10 μl of specimen preserved in Cary-Blair for the EBP assay. Bars are representative of a single specimen positive for each target presented as mean C values of triplicates ± standard deviation (SD). Comparison in molecular detection (C values) between bulk stool and 10-μl FecalSwab inoculums for each pathogen target were significant (**, P < 0.01). Equivalent detection to bulk stool was found for FecalSwab volumes of 50 μl (P > 0.05) for all targets with the exception of sapovirus (*, P < 0.05).
Clinical evaluation of the FecalSwab as a specimen type for the BD Max enteric viral and enteric bacterial panels
| Pathogen target | Results (no.) for indicated collection method | Sensitivity (% [95% confidence interval]) | ||||
|---|---|---|---|---|---|---|
| Total samples positive | Bulk stool positive | Swab positive | Total samples negative | Bulk stool | Swab | |
| Virus ( | ||||||
| Adenovirus | 17 | 15 | 17 | 118 | 88.2 (63.6–98.5) | 100.0 (80.5–100) |
| Astrovirus | 21 | 21 | 21 | 112 | 100.0 (83.9–100) | 100.0 (83.9–100) |
| Norovirus | 20 | 20 | 20 | 113 | 100.0 (83.2–100) | 100.0 (83.2–100) |
| Rotavirus | 24 | 22 | 24 | 111 | 91.7 (73.0–99.0) | 100.0 (85.8–100) |
| Sapovirus | 21 | 20 | 21 | 113 | 95.2 (76.2–99.9) | 100.0 (84.0–100) |
| Overall EVP | 103 | 98 | 103 | 567 | 95.1 (89.0–98.4) | 100.0 (96.5–100) |
| Bacterium ( | ||||||
| | 20 | 19 | 20 | 73 | 95.0 (75.1–99.9) | 100.0 (83.1–100) |
| | 17 | 17 | 17 | 77 | 100.0 (80.5–100) | 100.0 (80.5–100) |
| | 12 | 12 | 12 | 81 | 100.0 (73.5–100) | 100.0 (73.5–100) |
| Shiga toxin | 14 | 13 | 14 | 80 | 92.9 (66.1–99.8) | 100.0 (76.8–100) |
| Overall EBP | 63 | 61 | 63 | 311 | 95.2 (89.0–99.6) | 100.0 (94.3–100) |
Previous RT-PCR characterization for detection of enteropathogens was set as the reference standard for calculation of sensitivity.
FIG 3Effect of FecalSwab storage time and temperature on the molecular detection of viral and bacterial enteropathogens in stool specimens. FecalSwab samples were prepared from clinical specimens positive for each pathogen target and stored at 4°C (A), 22°C (B), and 35°C (C) for 14 days. Samples were collected from each FecalSwab at baseline and at days 1, 2, 7, and 14. Cycle threshold (C) values were determined using the BD Max EVP and EBP assays. Bars are representative of experimental triplicates and are presented as mean ΔC values ± SD from baseline.