Literature DB >> 32447499

Genetic relationship and nuclear dna content variation in Tef [Eragrostis tef (Zucc.) Trotter] accessions.

Caglar Kaya1, Iskender Tiryaki2, Ugur Sari1, Metin Tuna3.   

Abstract

This study was initiated to reveal genetic relationship of 25 tef (Eragrostis tef (Zucc.) accessions by using 10 SSR markers and to determine DNA content variation by using flow cytometer analysis. Ten markers produced a total of 18 alleles and 11 of those were polymorphic. The mean polymorphism rate was 66.6%. The highest polymorphism information content value was obtained from marker CNLTs370 with 0.69 while markers CNTLs11 and CNTLs133 produced monomorphic bands only. UPGMA analysis divided 25 tef genotypes into three main clades. The accessions PI193511 and PI195934 were distinctly separated from the others. No ploidy differences were determined among the 25 tef accessions. 2C mean nuclear DNA content ranged from 1.406 pg to 1.510 with mean of 1.460 pg. The results of this study indicated that SSR markers successfully determined genetic relationship of 25 tef accession although they had a low rate of polymorphism. This study also revealed that available tef related SSR markers should be optimized before use and their efficiency may vary based on tef genotypes or accessions used.

Entities:  

Keywords:  DNA; Flow cytometry; Ploidy; SSR; Tef

Mesh:

Substances:

Year:  2020        PMID: 32447499     DOI: 10.1007/s11033-020-05537-w

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  15 in total

1.  Genetic characterization of two Eragrostis species using AFLP and morphological traits.

Authors:  M Ayele; H Tefera; K Assefa; H T Nguyen
Journal:  Hereditas       Date:  1999       Impact factor: 3.271

2.  Inter simple sequence repeat (ISSR) analysis of genetic diversity in tef [Eragrostis tef (Zucc.) Trotter].

Authors:  Kebebew Assefa; Arnulf Merker; Hailu Tefera
Journal:  Hereditas       Date:  2003       Impact factor: 3.271

3.  A genetic linkage map of tef [Eragrostis tef (Zucc.) Trotter] based on amplified fragment length polymorphism.

Authors:  G Bai; H Tefera; M Ayele; H T Nguyen
Journal:  Theor Appl Genet       Date:  1999-08       Impact factor: 5.699

4.  Expressed sequence tag analysis in tef (Eragrostis tef (Zucc) Trotter).

Authors:  Ju-Kyung Yu; Qi Sun; Mauricio La Rota; Hugh Edwards; Hailu Tefera; Mark E Sorrells
Journal:  Genome       Date:  2006-04       Impact factor: 2.166

Review 5.  The origins and progress of genomics research on Tef (Eragrostis tef).

Authors:  Dejene Girma; Kebebew Assefa; Solomon Chanyalew; Gina Cannarozzi; Cris Kuhlemeier; Zerihun Tadele
Journal:  Plant Biotechnol J       Date:  2014-06       Impact factor: 9.803

Review 6.  Tef: The Rising Ancient Cereal: What do we know about its Nutritional and Health Benefits?

Authors:  Habtu Shumoy; Katleen Raes
Journal:  Plant Foods Hum Nutr       Date:  2017-12       Impact factor: 3.921

Review 7.  Insights into deployment of DNA markers in plant variety protection and registration.

Authors:  Seyed Hossein Jamali; James Cockram; Lee T Hickey
Journal:  Theor Appl Genet       Date:  2019-05-02       Impact factor: 5.699

Review 8.  Diversifying crops for food and nutrition security - a case of teff.

Authors:  Acga Cheng; Sean Mayes; Gemedo Dalle; Sebsebe Demissew; Festo Massawe
Journal:  Biol Rev Camb Philos Soc       Date:  2015-10-12

Review 9.  Significance and prospects of an orphan crop tef.

Authors:  Solomon Chanyalew; Setotaw Ferede; Tebkew Damte; Tsion Fikre; Yazachew Genet; Worku Kebede; Kidist Tolossa; Zerihun Tadele; Kebebew Assefa
Journal:  Planta       Date:  2019-06-20       Impact factor: 4.116

10.  Genetic diversity in Indian common bean (Phaseolus vulgaris L.) using random amplified polymorphic DNA markers.

Authors:  Vipin Kumar; Shailendra Sharma; Amit Kumar Sharma; Mukesh Kumar; Shiveta Sharma; Sunil Malik; K P Singh; R S Sanger; K V Bhat
Journal:  Physiol Mol Biol Plants       Date:  2009-02-26
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