| Literature DB >> 32437361 |
David J Schaeffer1, Jeffrey M Levengood2, Michael J Adkesson3.
Abstract
Reproductive success of endangered Humboldt penguin (Spheniscus humboldti) colonies in Peru has been associated with nesting habitat type, presumably due to differences in environmental exposure and activity patterns that may affect energy demands and metabolism. Gas chromatography and mass spectrometry were used to determine serum concentrations of 19 saccharides from 30 Humboldt penguins nesting at Punta San Juan, Peru in order to evaluate differences in metabolic state between penguins nesting in a sheltered burrow or crevice (n = 17) and those in exposed surface nests (n = 13). Univariate and multivariate statistical analyses identified serum saccharides (arabinose, maltose, glucose-6-phosphate, and levoglucosenone in particular) that were nest-dimorphic with substantial differences between surface- and sheltered-nesting penguins. Four sugars (arabinose, xylose, fructose-6-phosphate, and sucrose) had ≥ 2-fold difference in concentration between nest types. Seven saccharides were in the top five subsets generated by discriminant analysis; four of these are simple sugars (D-glucopyranose, α ⇄ β; D-glucose; D-maltose; and D-mannose) and three are derivatives (glucose 6-phosphate, levoglucosenone, and N-acetylglucosamine). D-ribose had the highest information values (generated from weight-of-evidence values) followed by glucose 6-phosphate, levoglucosenone, and D-galactose. Sex was not a significant predictor of saccharide concentration. Levoglucosenone, which is a metabolite of the environmental contaminant levoglucosan, was significantly higher in surface-nesting penguins, reflecting a higher rate of exposure in non-sheltered penguins. Differences in the saccharide profiles of surface- and sheltered-nesting Humboldt penguins likely reflect increased metabolic requirements of surface-nesters at Punta San Juan. Conservation of appropriate sheltered-nesting habitat for penguins is essential for sustained reproductive success and colony health.Entities:
Year: 2020 PMID: 32437361 PMCID: PMC7241729 DOI: 10.1371/journal.pone.0233101
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Saccharides identified in 30 free-ranging Humboldt penguins.
Concentration relative to standards, mean (SD), and Cohen’s d for nest and sex.
| 1,6-Anhydro-β-D-glucopyranose, 1,6-Anhydro-β-D-glucose, 1,6-Anhydroglucose, Levoglucosan, 162.14, {498-07-7, 54-17-1} | 0.36 | 0.51 | -0.38 | 0.64 | 0.98 | |||||
| Arabinose, 150.13 {147-81-9} | 1.61 | 3.22 | -0.85 | 9.70 | 14.11 | |||||
| D-Fructose, 180.16 {57-48-7} | 4.62 | 7.06 | 0.06 | 4.23 | 4.58 | |||||
| D-Galactose, 180.16 {59-23-4} | 6852.37 | 2773.32 | 0.38 | 6012.56 | 1111.55 | |||||
| D-Glucoheptulose, 210.18 {5349-37-1} | 6.86 | 7.69 | 0.35 | 4.70 | 3.18 | |||||
| D-Glucopyranose, 180.16 {54-17-1} | 1486.62 | 430.92 | -0.50 | 1727.33 | 538.44 | |||||
| D-Glucose, 180.16 {50-99-7} | 23060.38 | 7177.13 | -0.36 | 25315.92 | 4519.72 | |||||
| D-Maltose, 342.3 {69-79-4} | 32.74 | 19.56 | 0.48 | 24.38 | 13.62 | |||||
| D-Mannose, 180.16 {3458-28-4} | 23.29 | 17.24 | 0.15 | 21.06 | 11.02 | |||||
| D-Ribose, 150.13 {50-69-1} | 2.66 | 1.60 | -0.58 | 4.58 | 4.72 | |||||
| D-Xylose, 150.13 {58-86-6} | 0.66 | 1.02 | -0.43 | 2.23 | 5.39 | |||||
| Fructose 6-phosphate, 260.14 {643-13-0} | 0.46 | 0.69 | -0.82 | 1.14 | 0.99 | |||||
| Galactofuranose, 180.16 {19217-07-3} | 29.55 | 21.86 | -0.15 | 32.48 | 14.37 | |||||
| Glucose 6-phosphate, 260.14 {56-73-5} | 0.81 | 0.71 | -0.69 | 1.40 | 1.01 | |||||
| Levoglucosenonec, 126.11 {37112-31-5} | 51.99 | 28.07 | -0.23 | 59.28 | 36.60 | |||||
| N-Acetylglucosamine, 221.21 {7512-17-6} | 17.64 | 12.67 | 0.54 | 11.62 | 8.92 | |||||
| Sedoheptulose (D-altro-2-heptulose), 210.18 {3019-74-7} | 1.11 | 1.94 | -0.04 | 1.17 | 1.07 | |||||
| Sedoheptulose 7-phosphate, 290.16 {2646-35-7} | 1.85 | 1.17 | -0.13 | 1.99 | 0.97 | |||||
| Sucrose, 342.3 {57-50-1} | 0.41 | 0.45 | -0.46 | 2.52 | 6.96 | |||||
| 1,6-Anhydro-β-D-glucopyranose, 1,6-Anhydro-β-D-glucose, 1,6-Anhydroglucose, Levoglucosan, 162.14, {498-07-7, 54-17-1} | 0.27 | 0.24 | -0.40 | 0.57 | 0.90 | |||||
| Arabinose, 150.13 {147-81-9} | 2.22 | 5.35 | -0.43 | 6.57 | 11.82 | |||||
| D-Fructose, 180.16 {57-48-7} | 2.29 | 1.91 | -0.55 | 5.54 | 7.06 | |||||
| D-Galactose, 180.16 {59-23-4} | 6192.16 | 1427.80 | -0.19 | 6628.68 | 2555.44 | |||||
| D-Glucoheptulose, 210.18 {5349-37-1} | 5.16 | 2.65 | -0.17 | 6.23 | 7.42 | |||||
| D-Glucopyranose, 180.16 {54-17-1} | 1405.20 | 392.45 | -0.56 | 1674.95 | 523.52 | |||||
| D-Glucose, 180.16 {50-99-7} | 20945.98 | 4946.62 | -0.74 | 25416.94 | 6475.52 | |||||
| D-Maltose, 342.3 {69-79-4} | 23.79 | 14.55 | -0.47 | 31.87 | 18.44 | |||||
| D-Mannose, 180.16 {3458-28-4} | 23.96 | 16.16 | 0.13 | 22.10 | 13.41 | |||||
| D-Ribose, 150.13 {50-69-1} | 3.00 | 3.37 | -0.22 | 3.76 | 3.46 | |||||
| D-Xylose, 150.13 {58-86-6} | 0.34 | 0.30 | -0.42 | 1.85 | 4.40 | |||||
| Fructose 6-phosphate, 260.14 {643-13-0} | 0.40 | 0.63 | -0.60 | 0.92 | 0.96 | |||||
| Galactofuranose, 180.16 {19217-07-3} | 29.36 | 20.67 | -0.13 | 31.84 | 17.92 | |||||
| Glucose 6-phosphate, 260.14 {56-73-5} | 0.60 | 0.52 | -0.84 | 1.30 | 0.95 | |||||
| Levoglucosenonec, 126.11 {37112-31-5} | 59.73 | 33.57 | 0.22 | 52.73 | 31.46 | |||||
| N-Acetylglucosamine, 221.21 {7512-17-6} | 14.63 | 6.08 | -0.07 | 15.44 | 13.31 | |||||
| Sedoheptulose (D-altro-2-heptulose), 210.18 {3019-74-7} | 1.18 | 2.28 | 0.04 | 1.12 | 1.19 | |||||
| Sedoheptulose 7-phosphate, 290.16 {2646-35-7} | 1.20 | 0.81 | -1.17 | 2.30 | 0.99 | |||||
| Sucrose, 342.3 {57-50-1} | 0.26 | 0.34 | -0.34 | 1.86 | 5.62 | |||||
a The Chemical Abstracts Service (CAS), http://www.cas.org/, is a division of the American Chemical Society, https://www.acs.org/.
c Code by R Wicklin, How to Winsorize data in SAS (The DO Loop July 15, 2015 https://blogs.sas.com/content/iml/2015/07/15/winsorize-data.htm).
c Levoglucosenone is from exogenous sources (see text).
Scaling factors for the ratio of Winsorized standard deviations estimated using 107 random values from a normal distribution with mean = 0 and SD = 1.
| Mean | Std Dev | Minimum | Maximum | Adjustment | |
|---|---|---|---|---|---|
| Random sample | 5.38E-05 | 1.00008 | -5.0722082 | 5.2492638 | |
| γ = 0.2, 2-sided | 8.67E-05 | 0.64192 | -0.8415472 | 0.8414321 | 0.642 |
| γ = 0.2, Upper 1-sided | -1.12E-01 | 0.83291 | -5.3790776 | 0.8414321 | 0.833 |
| γ = 0.2, Lower 1-sided | 1.12E-01 | 0.83278 | -0.8415472 | 5.5836618 | 0.833 |
| γ = 0.1, 2-sided | 9.71E-05 | 0.82400 | -1.2820395 | 1.2819490 | 0.824 |
| γ = 0.1, Upper 1-sided | -4.72E-02 | 0.91511 | -5.3790776 | 1.2819490 | 0.915 |
| γ = 0.1, Lower 1-sided | 4.74E-02 | 0.91500 | -1.2820395 | 5.5836618 | 0.915 |
Saccharides in the top 10 models based on K and the magnitudes (closeness to 100%) and equality of specificity and sensitivity.
| K | Saccharides | Specificity (%) (n = 17) | Sensitivity (%) (n = 13) |
|---|---|---|---|
| 3 [1] | Arabinose, D-Glucose, D-Maltose | 82.35 | 84.62 |
| 3 [2] | D-Maltose, Glucose-6-phosphate, Levoglucosenone | 82.35 | 84.62 |
| 4 [3] | Arabinose, D-Glucopyranose, D-Maltose, Levoglucosenone | 94.12 | 92.31 |
| 4 [4] | Arabinose, D-Maltose, Galactofuranose, Levoglucosenone | 88.24 | 92.31 |
| 4 [5] | Arabinose, D-Maltose, Glucose-6-phosphate, Levoglucosenone | 88.24 | 92.31 |
| 4 [6] | Arabinose, D-Xylose, Levoglucosenone, Sedoheptulose | 88.24 | 92.31 |
| 4 [7] | Arabinose, D-Galactose, D-Maltose, D-Xylose | 88.24 | 84.62 |
| 4 [8] | Arabinose, D-Galactose, D-Maltose, Fructose-6-phosphate | 88.24 | 84.62 |
| 4 [9] | Arabinose, D-Glucopyranose, Levoglucosenone, N-Acetylglucosamine | 88.24 | 84.62 |
| 4 [10] | Arabinose, D-Glucose, D-Maltose, D-Xylose | 88.24 | 84.62 |
Frequency of occurrence in the top 100 models, and for each predictor (saccharide), the proportionate amount Ψ compared to nest using the S4 matching correlation [(a+d)/N].
Sort order is decreasing information value (IV) of the predictor.
| Saccharide | Top 100 models [Rank], Frequency, (% of 438 occurrences) | Ψ (S4 positive matching correlation = | Information value (IV) |
|---|---|---|---|
| D-Ribose | [18.5] 6 (1.35%) | 0.733 | 1.054 |
| Glucose 6-phosphate | [9.5] 21 (4.71%) | 0.700 | 0.640 |
| Levoglucosenone | [4] 68 (15.25%) | 0.667 | 0.395 |
| D-Galactose | [8] 23 (5.16%) | 0.467 | 0.330 |
| Fructose 6-phosphate | [12] 19 (4.26%) | 0.633 | 0.229 |
| D-Glucose | [6] 31 (6.95%) | 0.633 | 0.223 |
| D-Mannose | [18.5] 6 (1.35%) | 0.467 | 0.207 |
| N-Acetylglucosamine | [4] 68 (15.25%) | 0.467 | 0.207 |
| D-Glucoheptulose | [17] 8 (1.79%) | 0.500 | 0.173 |
| Arabinose | [2] 69 (15.47%) | 0.600 | 0.111 |
| D-Xylose | [11] 20 (4.48%) | 0.600 | 0.111 |
| Sucrose | [4] 68 (15.25%) | 0.600 | 0.111 |
| D-Glucopyranose | [7] 25 (5.60%) | 0.600 | 0.106 |
| D-Maltose | [1] 77 (17.26%) | 0.500 | 0.043 |
| Galactofuranose | [15] 12 (2.69%) | 0.533 | 0.019 |
| 1,6-Anhydroglucose | [14] 15 (3.32%) | 0.567 | 0.005 |
| D-Fructose | [16] 10 (2.24%) | 0.567 | 0.005 |
| Sedoheptulose | [13] 17 (3.90) | 0.567 | 0.005 |
| Sedoheptulose 7-phosphate | [9.5] 21 (4.71%) | 0.533 | 0.000 |
a To minimize confusion of the meaning of “weight of evidence (WOE)” as used in statistical analysis from WOE as used in regulations and industry, we use and define the symbol Ψ in Eq 1
b Rules of thumb for IV values: strong IV > 0.3; Medium 0.1 ≤ IV ≤ 0.3; weak 0.2 ≤ IV ≤ 0.1; None IV ≤ 0.2 [16 p. 76]