| Literature DB >> 32436637 |
Sarika N Rao1, Victor Bernet1.
Abstract
BACKGROUND: Indeterminate thyroid nodules are diagnosed in up to 30% of fine-needle aspirations and the risk of malignancy in these cases are highly variable. Consequently, managing these nodules has been a challenge. While a diagnostic thyroidectomy would help clarify the pathology, there is the risk of developing surgical-related complications for a procedure that may not have been necessary and associated high costs. Genomic testing of indeterminate thyroid nodules may help better guide management.Entities:
Keywords: Thyroseq; indeterminate thyroid nodules; thyroid cancer
Mesh:
Substances:
Year: 2020 PMID: 32436637 PMCID: PMC7503096 DOI: 10.1002/mgg3.1288
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Figure 1Two common pathways implicated in thyroid cancer. The MAPK and the PI3K pathways are activated by the receptor tyrosine kinase (RTK) or by a fusion RTK. RTKs may include VEGFR, RET, FGFR, while fusion RTKs include RET/PTC, NTRK, and ALK. Increased activity of either of these RTKs (orange or red bars) by growth factors or increased expression by these sites, as well as mutations along the pathway, results in oncogenic activation of these pathways. Either pathway activation leads to tumor progression, differentiation, and decreased cell death. The MAPK pathway may be activated by mutations within RAS (H‐,N‐,K‐) or RAF, most specifically BRAFV600E. The PI3K pathway is negatively regulated by PTEN and may be activated by mutations in RAS, PIK3CA, PTEN, AKT, and mTOR. TP53 is a tumor suppressor gene and plays a role in regulating cell death, hence mutations within this gene lead to increased cell proliferation. TERT is a gene encoding the enzyme telomerase, and a mutation within the promoter region allows cells to overcome senescence, therefore increasing tumorigenesis. Patients with TERT promotor mutations that coexist with BRAF or RAS mutations have a worse prognosis
Test performance results from validation studies
| Test Name | Methodology | Bethesda category | Patients ( | Sensitivity (%) | Specificity (%) | PPV (%) | NPV (%) |
|---|---|---|---|---|---|---|---|
| Afirma® GEC (Alexander et al., | Micro‐array | III | 129 | 90 | 53 | 38 | 95 |
| IV | 81 | 90 | 49 | 37 | 94 | ||
| Afirma® GSC (Patel et al., | RNA sequencing | III | 114 | 93 | 71 | 51 | 97 |
| IV | 76 | 88 | 64 | 42 | 95 | ||
| Thyroseq® v0 (Nikiforov et al., | PCR | III | 247 | 63 | 99 | 88 | 94 |
| IV | 214 | 57 | 97 | 87 | 86 | ||
| Thyroseq® v2.1 (Nikiforov et al., | DNA and RNA NGS | III | 96 | 91 | 92 | 77 | 97 |
| Thyroseq® v2 (Nikiforov et al., | NGS | IV | 143 | 90 | 93 | 83 | 96 |
| Thyroseq® v3 (gene classifier) (Nikiforova et al., | NGS | III | 84 | 98 | 82 | N/A | N/A |
| IV | 74 | ||||||
| V | 17 | ||||||
| Thyroseq® v3 (gene classifier) (Steward et al., | NGS | III | 154 | 91 | 85 | 97 | 64 |
| IV | 93 | 97 | 75 | 98 | 68 | ||
| ThyGenX®/ThyraMIR® (Labourier et al., | NGS and miRNA expression | III | 58 | 94 | 80 | 68 | 97 |
| IV | 51 | 82 | 91 | 82 | 91 | ||
| RosettaGx Reveal™ (Lithwick‐Yanai et al., | miRNA | III and IV | 189 | 74 | 74 | 43 | 92 |
Abbreviations: GEC, genomic expression classifier; GSC, genomic sequencing classifier; miRNA, microRNA; NGS, next generational sequencing; NPV, negative predictive value; PCR, polymerase chain reaction; PPV, positive predictive value.