Literature DB >> 32435374

Structural and in Vivo Characterization of Tubastatin A, a Widely Used Histone Deacetylase 6 Inhibitor.

Sida Shen1, Michal Svoboda2, Guangming Zhang3, Maria A Cavasin4,5, Lucia Motlova2, Timothy A McKinsey4,5, James H Eubanks3, Cyril Bařinka2, Alan P Kozikowski6.   

Abstract

Tubastatin A, a tetrahydro-γ-carboline-capped selective HDAC6 inhibitor (HDAC6i), was rationally designed 10 years ago, and has become the best investigated HDAC6i to date. It shows efficacy in various neurological disease animal models, as HDAC6 plays a crucial regulatory role in axonal transport deficits, protein aggregation, as well as oxidative stress. In this work, we provide new insights into this HDAC6i by investigating the molecular basis of its interactions with HDAC6 through X-ray crystallography, determining its functional capability to elevate the levels of acetylated α-tubulin in vitro and in vivo, correlating PK/PD profiles to determine effective doses in plasma and brain, and finally assessing its therapeutic potential toward psychiatric diseases through use of the SmartCube screening platform.
Copyright © 2020 American Chemical Society.

Entities:  

Year:  2020        PMID: 32435374      PMCID: PMC7236036          DOI: 10.1021/acsmedchemlett.9b00560

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  42 in total

1.  Brain Penetrable Histone Deacetylase 6 Inhibitor SW-100 Ameliorates Memory and Learning Impairments in a Mouse Model of Fragile X Syndrome.

Authors:  Alan P Kozikowski; Sida Shen; Marta Pardo; Maurício T Tavares; Dora Szarics; Veronick Benoy; Chad A Zimprich; Zsófia Kutil; Guiping Zhang; Cyril Bařinka; Matthew B Robers; Ludo Van Den Bosch; James H Eubanks; Richard S Jope
Journal:  ACS Chem Neurosci       Date:  2018-12-14       Impact factor: 4.418

Review 2.  The ins and outs of tubulin acetylation: more than just a post-translational modification?

Authors:  Daniel Perdiz; Rafah Mackeh; Christian Poüs; Anita Baillet
Journal:  Cell Signal       Date:  2010-10-19       Impact factor: 4.315

3.  Histone Deacetylase 6-Selective Inhibitors and the Influence of Capping Groups on Hydroxamate-Zinc Denticity.

Authors:  Nicholas J Porter; Jeremy D Osko; Daniela Diedrich; Thomas Kurz; Jacob M Hooker; Finn K Hansen; David W Christianson
Journal:  J Med Chem       Date:  2018-08-17       Impact factor: 7.446

4.  The human Sir2 ortholog, SIRT2, is an NAD+-dependent tubulin deacetylase.

Authors:  Brian J North; Brett L Marshall; Margie T Borra; John M Denu; Eric Verdin
Journal:  Mol Cell       Date:  2003-02       Impact factor: 17.970

5.  Inhibition of HDAC6 increases acetylation of peroxiredoxin1/2 and ameliorates 6-OHDA induced dopaminergic injury.

Authors:  Wencheng Jian; Xinbing Wei; Lin Chen; Ziying Wang; Yu Sun; Shaowei Zhu; Haiyan Lou; Shaoqi Yan; Xinbing Li; Junlin Zhou; Bin Zhang
Journal:  Neurosci Lett       Date:  2017-08-18       Impact factor: 3.046

Review 6.  Recent advances in the discovery of potent and selective HDAC6 inhibitors.

Authors:  Xiu-Xiu Wang; Ren-Zhong Wan; Zhao-Peng Liu
Journal:  Eur J Med Chem       Date:  2017-10-16       Impact factor: 6.514

7.  SIRT2 ablation has no effect on tubulin acetylation in brain, cholesterol biosynthesis or the progression of Huntington's disease phenotypes in vivo.

Authors:  Anna Bobrowska; Gizem Donmez; Andreas Weiss; Leonard Guarente; Gillian Bates
Journal:  PLoS One       Date:  2012-04-12       Impact factor: 3.240

8.  Restoration of histone acetylation ameliorates disease and metabolic abnormalities in a FUS mouse model.

Authors:  Elisabeth Rossaert; Eveliina Pollari; Tom Jaspers; Lawrence Van Helleputte; Matthew Jarpe; Philip Van Damme; Katrien De Bock; Matthieu Moisse; Ludo Van Den Bosch
Journal:  Acta Neuropathol Commun       Date:  2019-07-05       Impact factor: 7.801

9.  Posttranslational modifications of tubulin and the polarized transport of kinesin-1 in neurons.

Authors:  Jennetta W Hammond; Chun-Fang Huang; Stefanie Kaech; Catherine Jacobson; Gary Banker; Kristen J Verhey
Journal:  Mol Biol Cell       Date:  2009-12-23       Impact factor: 4.138

10.  HDAC6 inhibition reverses axonal transport defects in motor neurons derived from FUS-ALS patients.

Authors:  Wenting Guo; Maximilian Naujock; Laura Fumagalli; Tijs Vandoorne; Pieter Baatsen; Ruben Boon; Laura Ordovás; Abdulsamie Patel; Marc Welters; Thomas Vanwelden; Natasja Geens; Tine Tricot; Veronick Benoy; Jolien Steyaert; Cynthia Lefebvre-Omar; Werend Boesmans; Matthew Jarpe; Jared Sterneckert; Florian Wegner; Susanne Petri; Delphine Bohl; Pieter Vanden Berghe; Wim Robberecht; Philip Van Damme; Catherine Verfaillie; Ludo Van Den Bosch
Journal:  Nat Commun       Date:  2017-10-11       Impact factor: 14.919

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  8 in total

1.  Structural Basis for the Selective Inhibition of HDAC10, the Cytosolic Polyamine Deacetylase.

Authors:  Corey J Herbst-Gervasoni; Raphael R Steimbach; Michael Morgen; Aubry K Miller; David W Christianson
Journal:  ACS Chem Biol       Date:  2020-07-23       Impact factor: 5.100

2.  Binding of inhibitors to active-site mutants of CD1, the enigmatic catalytic domain of histone deacetylase 6.

Authors:  Jeremy D Osko; David W Christianson
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-08-19       Impact factor: 1.056

3.  Aromatic Ring Fluorination Patterns Modulate Inhibitory Potency of Fluorophenylhydroxamates Complexed with Histone Deacetylase 6.

Authors:  Paris R Watson; Ping Bai; Changning Wang; Abigail D Cragin; Jacob M Hooker; David W Christianson
Journal:  Biochemistry       Date:  2022-09-08       Impact factor: 3.321

4.  Target deconvolution of HDAC pharmacopoeia reveals MBLAC2 as common off-target.

Authors:  Severin Lechner; Martin Ian P Malgapo; Christian Grätz; Raphael R Steimbach; Agnes Baron; Patrick Rüther; Simon Nadal; Carmen Stumpf; Christina Loos; Xin Ku; Polina Prokofeva; Ludwig Lautenbacher; Tino Heimburg; Vivian Würf; Chen Meng; Mathias Wilhelm; Wolfgang Sippl; Karin Kleigrewe; Josch K Pauling; Karl Kramer; Aubry K Miller; Michael W Pfaffl; Maurine E Linder; Bernhard Kuster; Guillaume Médard
Journal:  Nat Chem Biol       Date:  2022-04-28       Impact factor: 16.174

5.  Unique Molecular Interaction with the Histone Deacetylase 6 Catalytic Tunnel: Crystallographic and Biological Characterization of a Model Chemotype.

Authors:  Olasunkanmi O Olaoye; Paris R Watson; Nabanita Nawar; Mulu Geletu; Abootaleb Sedighi; Shazreh Bukhari; Yasir S Raouf; Pimyupa Manaswiyoungkul; Fettah Erdogan; Ayah Abdeldayem; Aaron D Cabral; Muhammad Murtaza Hassan; Krimo Toutah; Andrew E Shouksmith; Justyna M Gawel; Johan Israelian; Tudor B Radu; Niyati Kachhiyapatel; Elvin D de Araujo; David W Christianson; Patrick T Gunning
Journal:  J Med Chem       Date:  2021-02-12       Impact factor: 7.446

6.  First Fluorescent Acetylspermidine Deacetylation Assay for HDAC10 Identifies Selective Inhibitors with Cellular Target Engagement.

Authors:  Daniel Herp; Johannes Ridinger; Dina Robaa; Stephen A Shinsky; Karin Schmidtkunz; Talha Z Yesiloglu; Theresa Bayer; Raphael R Steimbach; Corey J Herbst-Gervasoni; Annika Merz; Christophe Romier; Peter Sehr; Nikolas Gunkel; Aubry K Miller; David W Christianson; Ina Oehme; Wolfgang Sippl; Manfred Jung
Journal:  Chembiochem       Date:  2022-06-10       Impact factor: 3.461

7.  Development of a potential PET probe for HDAC6 imaging in Alzheimer's disease.

Authors:  Ping Bai; Prasenjit Mondal; Frederick A Bagdasarian; Nisha Rani; Yan Liu; Ashley Gomm; Darcy R Tocci; Se Hoon Choi; Hsiao-Ying Wey; Rudolph E Tanzi; Can Zhang; Changning Wang
Journal:  Acta Pharm Sin B       Date:  2022-05-20       Impact factor: 14.903

8.  HDAC6 inhibitor ACY-1083 shows lung epithelial protective features in COPD.

Authors:  Jenny Horndahl; Rebecka Svärd; Pia Berntsson; Cecilia Wingren; Jingjing Li; Suado M Abdillahi; Baishakhi Ghosh; Erin Capodanno; Justin Chan; Lena Ripa; Annika Åstrand; Venkataramana K Sidhaye; Mia Collins
Journal:  PLoS One       Date:  2022-10-12       Impact factor: 3.752

  8 in total

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