| Literature DB >> 32435254 |
Alice L Baillie1, Anna-Lena Falz2, Stefanie J Müller-Schüssele2, Imogen Sparkes1.
Abstract
Organelle movement and interaction are dynamic processes. Interpreting the functional role and mechanistic detail of interactions at membrane contact sites requires careful quantification of parameters such as duration, frequency, proximity, and surface area of contact, and identification of molecular components. We provide an overview of current methods used to quantify organelle interactions in plants and other organisms and propose novel applications of existing technologies to tackle this emerging topic in plant cell biology.Entities:
Keywords: Förster resonance energy transfer; membrane contact sites; optical tweezers; organelle interactions; tethers
Year: 2020 PMID: 32435254 PMCID: PMC7218140 DOI: 10.3389/fpls.2020.00517
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
FIGURE 1Temporal and spatial characterization of organelle interactions. Organelles are typically within 10 – 30 nm of one another at contact sites, though greater tethering distances have also been reported (A). The surface area of the contact site varies depending on MCS type and in response to environmental conditions (B). Frequency and duration of organelle interactions can be measured from microscopy time series. In this example, Frequency = 1 interaction/frame area/4 × frame length and Duration = 2 × frame length (C). Biophysical techniques can be employed to probe physical interactions between organelles. Optical tweezers have confirmed physical interaction between organelle pairs including interaction between chloroplasts (red) and peroxisomes (gray), which may be mediated by peroxules, peroxisomal membrane extensions (Gao et al., 2016) (D). Proteins with specific roles are enriched at MCS. Where one MCS-specific protein is known, proximity-labeling can be used to identify further MCS proteins. A biotin ligase (e.g., TurboID, Arora et al., 2019) fused to the protein of interest, biotinylates proteins within a given radius (“r”); for BioID in vivo, r was determined to be ∼10 nm (Kim et al., 2014) (E). Various fluorescent sensor approaches may be used to visualize MCS (F-H). Bimolecular fluorescence complementation (BiFC) reporter systems emit a fluorescent signal upon the irreversible binding of split protein fragments to form the mature fluorescent protein (F). FRET pairs (Förster resonance energy transfer) interact reversibly. Either the ratio between acceptor and donor fluorescence, or the decreased lifetime (τ) of the donor molecule can be measured to detect interactions (G). Dimerization-dependent fluorescent proteins (ddFPs) emit a fluorescent signal only upon their interaction but, unlike BiFC reporters, interact reversibly (H).
Outcomes of current technologies, summarizing our knowledge to date of organelle interactions and their molecular components in plants.
| Organelle pair | Technique | Outcome | References |
| ER-PM | BiFC | FLS2-VenusN and VenusC-StRem1.3 create artificial ER-PM tethers | |
| Confocal microscopy, FRAP | Ionic stress increases ER-PM contact at SYT1-containing sites | ||
| Confocal microscopy, FRAP | Plasmolysis of Arabidopsis and N. tabacum cells reduces ER remodeling but does not affect protein flow; ER remains connected to the PM/cell wall via Hechtian strands | ||
| Confocal microscopy, TEM | There are ten VAP27 homologs in Arabidopsis; overexpression of VAP27-1 increases ER-PM contact area; VAP27-1 remains at ER-PM-cell wall contacts at the tips of Hechtian strands in plasmolyzed cells | ||
| Confocal microscopy, FRAP, TEM | SYT1 and VAP27 do not colocalize as reported by | ||
| Confocal microscopy, FRAP, TEM | SYT1 colocalizes with VAP27 at immobile ER-PM contact sites and is important for cellular tolerance of mechanical stress | ||
| GFP-trap, proteomics, FRET-FLIM | ER-PM contact site components identified by pull-down with existing candidates; FRET-FLIM used to confirm interactors from proteomics | ||
| Confocal microscopy, FRAP | The cytoskeleton, NET3C and VAP27 proteins mediate ER-PM contact in Arabidopsis | ||
| ER-Golgi | Optical tweezers | The Arabidopsis CASP protein mediates ER-Golgi tethering | |
| Optical tweezers | Optically trapped Golgi rarely detached from ER, more often causing the ER to remodel, indicating physical attachment | ||
| ER-chloroplast | Mutating chloroplast-localized proteins and targeting functional versions to the ER still allowed completion of biochemical pathways, suggesting exchange between these organelles, likely via MCS | ||
| Optical tweezers, biochemical analysis of isolated MCS fraction | ER associated with a chloroplast was trapped and pulled, but remained attached to the chloroplast at one end in both Arabidopsis and pea cells, indicating physical interaction | ||
| ER-mitochondrion | Confocal microscopy, optical tweezers | Mitochondria are tethered to the ER in tobacco leaf epidermal cells. Tethering is dependent on Miro2 and affects mitochondrial fusion | |
| Confocal microscopy | ER mediated mitochondrial morphological response to changes in light and cytosolic sugar levels; matrixule formation is ER-dependent | ||
| Confocal microscopy | Mitochondria associate with the ER in the moss | ||
| ER-peroxisome | Fluorescence and confocal microscopy | Live imaging of peroxisomes and the ER in Arabidopsis suggests close association but not luminal continuity | |
| Fluorescence and confocal microscopy | Peroxule extension in Arabidopsis is closely aligned with ER tubule dynamics | ||
| Peroxisome-oil body | Confocal microscopy, TEM | Sucrose levels within Arabidopsis cells modulate the extent of peroxisome-oil body interactions; the PED3 protein may tether these organelles | |
| Confocal microscopy | Peroxisomal extensions facilitate the transfer of the SDP1 protein from peroxisomes to oil bodies in Arabidopsis; the retromer complex may be involved in tethering | ||
| Peroxisome-mitochondria | Confocal microscopy | High light induces peroxule formation, and mitochondria cluster around these structures | |
| Nucleus-chloroplast | Fluorescence and confocal microscopy | Light-induced chloroplast movement also induces movement of associated nuclei | |
| Fluorescence and confocal microscopy, CLEM, Biosensor | Stromule-nuclear association increases during the immune response; protein, and possibly H2O2, move from the chloroplasts to the nucleus | ||
| Fluorescence and confocal microscopy, Biosensor | Demonstration of direct transfer of H2O2 from plastids to nucleus in tobacco | ||
| Chloroplast-peroxisome | Optical tweezers | Peroxisomes are tethered to chloroplasts via peroxules in tobacco leaf epidermal cells | |
| Femtosecond laser | In Arabidopsis palisade mesophyll cells, detachment of peroxisomes from chloroplasts requires greater force under light conditions than in the dark | ||
| Chloroplast- mitochondrion | Electron microscopy, biochemical analyses | Phosphate-deprived Arabidopsis cells increase chloroplast-mitochondrial contact and transfer digalactosyldiacylglycerol (DGDG) from chloroplasts to mitochondria | |
| PM-tonoplast/multivesicular bodies | BiFC | A wide range of native plant proteins can be used to generate artificial tethering between the PM and tonoplast or multivesicular bodies by fusion to the split-Venus reporter system components |