Literature DB >> 32434105

Liquid-like interactions in heterochromatin: Implications for mechanism and regulation.

Serena Sanulli1, Geeta J Narlikar2.   

Abstract

A large portion of the eukaryotic genome is packed into heterochromatin, a versatile platform that is essential to maintain genome stability. Often associated with a compact and transcriptionally repressed chromatin state, heterochromatin was earlier considered a static and locked compartment. However, cumulative findings over the last 17 years have suggested that heterochromatin displays dynamics at different timescales and size scales. These dynamics are thought to be essential for the regulation of heterochromatin. This review illustrates how the key principles underlying heterochromatin structure and function have evolved along the years and summarizes the discoveries that have led to the continuous revision of these principles. Using heterochromatin protein 1-mediated heterochromatin as a context, we discuss a novel paradigm for heterochromatin organization based on two emerging concepts, phase separation and nucleosome structural plasticity. We also examine the broader implications of this paradigm for chromatin organization and regulation beyond heterochromatin.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Biomolecular condensate; Chromatin; Dynamics; Heterochromatin; Nucleosome; Phase separation

Mesh:

Substances:

Year:  2020        PMID: 32434105      PMCID: PMC7371496          DOI: 10.1016/j.ceb.2020.03.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  57 in total

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Authors:  So Hee Kwon; Jerry L Workman
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Authors:  J Widom
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Review 3.  A Phase Separation Model for Transcriptional Control.

Authors:  Denes Hnisz; Krishna Shrinivas; Richard A Young; Arup K Chakraborty; Phillip A Sharp
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

Review 4.  Mechanisms of functional promiscuity by HP1 proteins.

Authors:  Daniele Canzio; Adam Larson; Geeta J Narlikar
Journal:  Trends Cell Biol       Date:  2014-03-04       Impact factor: 20.808

5.  Heterochromatin protein 1a is required for an open chromatin structure.

Authors:  Diane E Cryderman; Michael W Vitalini; Lori L Wallrath
Journal:  Transcription       Date:  2011-03

6.  Maintenance of stable heterochromatin domains by dynamic HP1 binding.

Authors:  Thierry Cheutin; Adrian J McNairn; Thomas Jenuwein; David M Gilbert; Prim B Singh; Tom Misteli
Journal:  Science       Date:  2003-01-31       Impact factor: 47.728

7.  The interplay between H2A.Z and H3K9 methylation in regulating HP1α binding to linker histone-containing chromatin.

Authors:  Daniel P Ryan; David J Tremethick
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

8.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  Budding yeast chromatin is dispersed in a crowded nucleoplasm in vivo.

Authors:  Chen Chen; Hong Hwa Lim; Jian Shi; Sachiko Tamura; Kazuhiro Maeshima; Uttam Surana; Lu Gan
Journal:  Mol Biol Cell       Date:  2016-09-07       Impact factor: 4.138

10.  Spatiotemporal regulation of Heterochromatin Protein 1-alpha oligomerization and dynamics in live cells.

Authors:  Elizabeth Hinde; Francesco Cardarelli; Enrico Gratton
Journal:  Sci Rep       Date:  2015-08-04       Impact factor: 4.379

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  11 in total

1.  The interplay of chromatin phase separation and lamina interactions in nuclear organization.

Authors:  Rabia Laghmach; Michele Di Pierro; Davit A Potoyan
Journal:  Biophys J       Date:  2021-10-13       Impact factor: 4.033

2.  Molecular organization of the early stages of nucleosome phase separation visualized by cryo-electron tomography.

Authors:  Meng Zhang; César Díaz-Celis; Bibiana Onoa; Cristhian Cañari-Chumpitaz; Katherinne I Requejo; Jianfang Liu; Michael Vien; Eva Nogales; Gang Ren; Carlos Bustamante
Journal:  Mol Cell       Date:  2022-07-30       Impact factor: 19.328

3.  The transcriptional coactivator RUVBL2 regulates Pol II clustering with diverse transcription factors.

Authors:  Hui Wang; Boyuan Li; Linyu Zuo; Bo Wang; Yan Yan; Kai Tian; Rong Zhou; Chenlu Wang; Xizi Chen; Yongpeng Jiang; Haonan Zheng; Fangfei Qin; Bin Zhang; Yang Yu; Chao-Pei Liu; Yanhui Xu; Juntao Gao; Zhi Qi; Wulan Deng; Xiong Ji
Journal:  Nat Commun       Date:  2022-09-28       Impact factor: 17.694

4.  Local chromatin context regulates the genetic requirements of the heterochromatin spreading reaction.

Authors:  R A Greenstein; Henry Ng; Ramon R Barrales; Catherine Tan; Sigurd Braun; Bassem Al-Sady
Journal:  PLoS Genet       Date:  2022-05-18       Impact factor: 6.020

5.  On the stability and layered organization of protein-DNA condensates.

Authors:  Andrew P Latham; Bin Zhang
Journal:  Biophys J       Date:  2022-03-29       Impact factor: 3.699

Review 6.  Phase separation in genome organization across evolution.

Authors:  Marina Feric; Tom Misteli
Journal:  Trends Cell Biol       Date:  2021-03-23       Impact factor: 21.167

Review 7.  Nuclear organization and regulation of the differentiated state.

Authors:  Eliya Bitman-Lotan; Amir Orian
Journal:  Cell Mol Life Sci       Date:  2021-01-28       Impact factor: 9.261

Review 8.  A Liquid State Perspective on Dynamics of Chromatin Compartments.

Authors:  Rabia Laghmach; Michele Di Pierro; Davit Potoyan
Journal:  Front Mol Biosci       Date:  2022-01-13

Review 9.  Emerging Roles for Chromo Domain Proteins in Genome Organization and Cell Fate in C. elegans.

Authors:  Abhimanyu DasGupta; Tammy L Lee; Chengyin Li; Arneet L Saltzman
Journal:  Front Cell Dev Biol       Date:  2020-10-23

10.  Suppression of liquid-liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells.

Authors:  Sergey V Ulianov; Artem K Velichko; Mikhail D Magnitov; Artem V Luzhin; Arkadiy K Golov; Natalia Ovsyannikova; Igor I Kireev; Alexey S Gavrikov; Alexander S Mishin; Azat K Garaev; Alexander V Tyakht; Alexey A Gavrilov; Omar L Kantidze; Sergey V Razin
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

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