Literature DB >> 32433626

Assessing motor-related phenotypes of Caenorhabditis elegans with the wide field-of-view nematode tracking platform.

Mandy Koopman1, Quentin Peter2, Renée I Seinstra3, Michele Perni2, Michele Vendruscolo2, Christopher M Dobson2, Tuomas P J Knowles2, Ellen A A Nollen4.   

Abstract

Caenorhabditis elegans is a valuable model organism in biomedical research that has led to major discoveries in the fields of neurodegeneration, cancer and aging. Because movement phenotypes are commonly used and represent strong indicators of C. elegans fitness, there is an increasing need to replace manual assessments of worm motility with automated measurements to increase throughput and minimize observer biases. Here, we provide a protocol for the implementation of the improved wide field-of-view nematode tracking platform (WF-NTP), which enables the simultaneous analysis of hundreds of worms with respect to multiple behavioral parameters. The protocol takes only a few hours to complete, excluding the time spent culturing C. elegans, and includes (i) experimental design and preparation of samples, (ii) data recording, (iii) software management with appropriate parameter choices and (iv) post-experimental data analysis. We compare the WF-NTP with other existing worm trackers, including those having high spatial resolution. The main benefits of WF-NTP relate to the high number of worms that can be assessed at the same time on a whole-plate basis and the number of phenotypes that can be screened for simultaneously.

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Year:  2020        PMID: 32433626     DOI: 10.1038/s41596-020-0321-9

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  56 in total

1.  Rates of behavior and aging specified by mitochondrial function during development.

Authors:  Andrew Dillin; Ao-Lin Hsu; Nuno Arantes-Oliveira; Joshua Lehrer-Graiwer; Honor Hsin; Andrew G Fraser; Ravi S Kamath; Julie Ahringer; Cynthia Kenyon
Journal:  Science       Date:  2002-12-05       Impact factor: 47.728

2.  Genome-wide RNA interference screen identifies previously undescribed regulators of polyglutamine aggregation.

Authors:  Ellen A A Nollen; Susana M Garcia; Gijs van Haaften; Soojin Kim; Alejandro Chavez; Richard I Morimoto; Ronald H A Plasterk
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-14       Impact factor: 11.205

3.  The threshold for polyglutamine-expansion protein aggregation and cellular toxicity is dynamic and influenced by aging in Caenorhabditis elegans.

Authors:  James F Morley; Heather R Brignull; Jill J Weyers; Richard I Morimoto
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-16       Impact factor: 11.205

4.  DAF-16 target genes that control C. elegans life-span and metabolism.

Authors:  Siu Sylvia Lee; Scott Kennedy; Andrew C Tolonen; Gary Ruvkun
Journal:  Science       Date:  2003-04-10       Impact factor: 47.728

5.  Functional genomic approach to identify novel genes involved in the regulation of oxidative stress resistance and animal lifespan.

Authors:  Yongsoon Kim; Hong Sun
Journal:  Aging Cell       Date:  2007-07-03       Impact factor: 9.304

6.  Dopamine signaling is essential for precise rates of locomotion by C. elegans.

Authors:  Daniel T Omura; Damon A Clark; Aravinthan D T Samuel; H Robert Horvitz
Journal:  PLoS One       Date:  2012-06-13       Impact factor: 3.240

7.  C. elegans model identifies genetic modifiers of alpha-synuclein inclusion formation during aging.

Authors:  Tjakko J van Ham; Karen L Thijssen; Rainer Breitling; Robert M W Hofstra; Ronald H A Plasterk; Ellen A A Nollen
Journal:  PLoS Genet       Date:  2008-03-21       Impact factor: 5.917

Review 8.  Caenorhabditis elegans: an emerging model in biomedical and environmental toxicology.

Authors:  Maxwell C K Leung; Phillip L Williams; Alexandre Benedetto; Catherine Au; Kirsten J Helmcke; Michael Aschner; Joel N Meyer
Journal:  Toxicol Sci       Date:  2008-06-19       Impact factor: 4.849

9.  An anticancer drug suppresses the primary nucleation reaction that initiates the production of the toxic Aβ42 aggregates linked with Alzheimer's disease.

Authors:  Johnny Habchi; Paolo Arosio; Michele Perni; Ana Rita Costa; Maho Yagi-Utsumi; Priyanka Joshi; Sean Chia; Samuel I A Cohen; Martin B D Müller; Sara Linse; Ellen A A Nollen; Christopher M Dobson; Tuomas P J Knowles; Michele Vendruscolo
Journal:  Sci Adv       Date:  2016-02-12       Impact factor: 14.136

10.  Powerful and interpretable behavioural features for quantitative phenotyping of Caenorhabditis elegans.

Authors:  Avelino Javer; Lidia Ripoll-Sánchez; André E X Brown
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-09-10       Impact factor: 6.237

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  4 in total

1.  Comparative Analysis of Experimental Methods to Quantify Animal Activity in Caenorhabditis elegans Models of Mitochondrial Disease.

Authors:  Manuela Lavorato; Neal D Mathew; Nina Shah; Eiko Nakamaru-Ogiso; Marni J Falk
Journal:  J Vis Exp       Date:  2021-04-04       Impact factor: 1.355

Review 2.  C. elegans: A biosensor for host-microbe interactions.

Authors:  Cassandra Backes; Daniel Martinez-Martinez; Filipe Cabreiro
Journal:  Lab Anim (NY)       Date:  2021-03-01       Impact factor: 12.625

Review 3.  Exposome, Molecular Pathways and One Health: The Invertebrate Caenorhabditis elegans.

Authors:  Anna von Mikecz
Journal:  Int J Mol Sci       Date:  2022-08-13       Impact factor: 6.208

4.  Identification of a Thyroid Hormone Derivative as a Pleiotropic Agent for the Treatment of Alzheimer's Disease.

Authors:  Massimiliano Runfola; Michele Perni; Xiaoting Yang; Maria Marchese; Andrea Bacci; Serena Mero; Filippo M Santorelli; Beatrice Polini; Grazia Chiellini; Daniela Giuliani; Antonietta Vilella; Martina Bodria; Eleonora Daini; Eleonora Vandini; Simon Rudge; Sheraz Gul; Michale O J Wakelam; Michele Vendruscolo; Simona Rapposelli
Journal:  Pharmaceuticals (Basel)       Date:  2021-12-19
  4 in total

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