| Literature DB >> 32431085 |
Bootan Rahman1, Evar Sadraddin2, Annamaria Porreca3.
Abstract
The virologically confirmed cases of a new coronavirus disease (COVID-19) in the world are rapidly increasing, leading epidemiologists and mathematicians to construct transmission models that aim to predict the future course of the current pandemic. The transmissibility of a virus is measured by the basic reproduction number ( R0 ), which measures the average number of new cases generated per typical infectious case. This review highlights the articles reporting rigorous estimates and determinants of COVID-19 R0 for the most affected areas. Moreover, the mean of all estimated R0 with median and interquartile range is calculated. According to these articles, the basic reproduction number of the virus epicentre Wuhan has now declined below the important threshold value of 1.0 since the disease emerged. Ongoing modelling will inform the transmission rates seen in the new epicentres outside of China, including Italy, Iran and South Korea.Entities:
Keywords: COVID-19; SARA-CoV-2; pandemic; the basic reproduction number (zzm321990R0)
Mesh:
Year: 2020 PMID: 32431085 PMCID: PMC7267092 DOI: 10.1002/rmv.2111
Source DB: PubMed Journal: Rev Med Virol ISSN: 1052-9276 Impact factor: 11.043
Description of estimation methods with list of used abbreviations
| ID | Methods | Method description with its abbreviation |
|---|---|---|
| 1 | SIR model | It is a compartmental model in epidemiology that divides an infectious disease into three parts: |
| 2 | SEIR model |
|
| 3 | MSIR model |
|
| 4 | MSEIR model | It is the same as the model MSIR by joining Exposed component and becoming |
| 5 | SEIHR model | Entering the Hospitalized class to SEIR model to obtain: |
| 6 | SEIAR model | A modified SEIR model with another movement class of compartmental model known as Asymptomatic, to get: |
| 7 | SEQR model | Incorporating the quarantine policy to a mathematical model and obtaining |
| 8 | SIRD model | It is the SIR model that addresses the removed class with recovered and dead class to be |
| 9 | SUQC model | In this model, the infectious class of transmission model is separeted as un‐quanrantined, quarantined and confirmed infected. The model is named |
| 10 | SIQR model | Its modified SIR model with considering quarantine, Susceptible‐Infectious‐Quarantined‐Recovered (SIQR). |
| 11 | S E1E2I1I2HR time‐dependent model | It is a mathematical model focusing on the effects of medical resourceson transmission of COVID‐19, stands for susceptible S (t), pre‐stage exposed E1(t), post‐stage exposed E2(t), infected with mild symptoms I1(t), infected with serious symptoms I2(t), hospitalized H(t) and recovered R(t) individuals. |
| 12 | SIDARTHE model | It is a mathematical model that designed to show transsimssion between different stages in infectious disease. The abbrevation refers to: |
| 13 | Exponential growth | It is a model that varies exponentially with the time by a specific rate. |
| 14 | Generalized growth model | It is the growth model with two parameters: (r) represents the growth rate parameter with (p) that is the scaling growth rate parameter. Whenever |
| 15 | Logistic growth model | It is a mathematical model that starts exponentially but it gets stabilized due to the capacity of population. |
| 16 | Bayesian estimation method | It is a paramter estimation method that deals with paramters as random variables in a statistical model. |
| 17 | Fudan‐CCDC model | Developed model for the growth rate and CCDC stands for |
| 18 | Least square based method | It is a procedure to best fit data in statistics. |
| 19 | MCMC method |
|
| 20 | Maximum Likelihood Estimation | It is a method used to estimate parameters with knowing their distributions. |
| 21 | Phenomenological modelling | Statistical method for modelling. |
The basic reproduction number ( ) from the published articles in Wuhan
| ID | Researcher | Date | Location | Methods | Ro Est. | Ro (%95 CI) |
|---|---|---|---|---|---|---|
| 1 | Imai | 18 January 2020 | Wuhan | Epidemic trajectories | 2.60 | (1.50‐3.50) |
| 2 | Li et al | 22 January 2020 | Wuhan | Exponential growth | 2.20 | (1.40‐3.90) |
| 3 | Majumder et al | 26 January 2020 | Wuhan | Phenomenological modelling | 2.55 | (2.00‐3.10) |
| 4 | Park et al | 24 February 2020 | Wuhan | 2.20 | ||
| 5 | Read et al | 1‐22 January 2020 | Wuhan | SEIR | 3.11 | (2.39‐4.13) |
| 6 | Shao et al | 16‐February‐20 | Wuhan | SEIR model and Gamma distribution | 3.12 | |
| 7 | Shao et al | 16 February 20 | Wuhan | Fudan‐CCDC model | 3.32 | |
| 8 | Tuite et al | 24 January 20 | Wuhan | Disease transmission model | 2.30 | |
| 9 | WHO | 22 January 20 | Wuhan | 1.95 | (1.40‐2.50) | |
| 10 | Wu et al | 25 January 20 | Wuhan | Markov Chain Monte Carlo methods | 2.68 | (2.47‐2.86) |
| 11 | Zhang et al | 27 January 2020‐10 February 2020 | Wuhan | SEIAR model | 2.88 | |
| 12 | Zhao & Chen | Before 30 January 2020 | Wuhan | SUQC Model (Stage I) | 4.70 | |
| 13 | Zhao & Chen | After 30 January 2020 | Wuhan | SUQC Model (Stage II) | 0.75 | |
| 14 | Zhao & Chen | After 13 Feb 2020 | Wuhan | SUQC Model (Stage III) | 0.47 | |
| 15 | Wang et al | 23 January 2020 | Wuhan | SE1E2I1I2HR time‐dependent model | 2.71 |
The basic reproduction number ( ) from the published articles
| ID | Researcher | Date | Location | Methods | Ro Est. | Ro (%95 CI) |
|---|---|---|---|---|---|---|
| 1 | Anastassopoulou et al | 11‐17 January 2020 | Hubei, China | SIRD model | 4.60 | %90 CI (3.56‐5.65) |
| 2 | Choi et al | 17 February 2020 | Hubei, China | Deterministic mathematical model (SEIHR) | 4.26 | (4.24‐4.29) |
| 3 | Choi et al | 17 February 2020 | South Korea | Deterministic mathematical model (SEIHR) | 0.55 | (0.51‐0.60) |
| 4 | Choi et al | 05 March 2020 | NGP‐South Korea | Deterministic mathematical model(SEIHR) | 3.50 | (3.47‐3.54) |
| 5 | Di Lauro et al | 02 March 2020 | World | Metapopulation model | 2.50 | |
| 6 | Hao | 17 February 2020 | World | MSIR | 1.50 | |
| 7 | Hao | 17 February 2020 | World | MSEIR | 3.50 | |
| 8 | Hellewell et al | 05 February 2020 | World | Branching process model | 2.50 | (1.50–3.50) |
| 9 | Hossain et al | 13 March 2020 | China | SIR (44 days quarantined) | 1.40 | |
| 10 | Hossain et al | 13 March 2020 | China | SIR (24 days quarantine) | 1.68 | |
| 11 | Hossain et al | 13 March 2020 | China | SIR (10 days quarantined) | 2.92 | |
| 12 | Imai et al | 18 January 2020 | Wuhan | Computational modelling of potential epidemic trajectories | 2.60 | (1.50–3.50) |
| 13 | Jung et al | 08 December 2020 | China | Developed exponential growth model and using MCMC techinqe. | 2.10 | (2.00‐2.20) |
| 14 | Jung et al | 24 January 2020 | China with exported cases | Developed exponential growth model and using MCMC techinqe. | 3.20 | (2.70‐3.70) |
| 15 | Ku et al | 12 February 2020 | Anhui, China | SIR after lockdown of Wuhan | 3.89 | (3.27‐4.50) |
| 16 | Ku et al | 12 February 2020 | Beijing, China | SIR after lockdown of Wuhan | 3.30 | (1.89‐4.32) |
| 17 | Ku et al | 12 February 2020 | Chongqing, China | SIR after lockdown of Wuhan | 2.22 | (1.26‐3.14) |
| 18 | Ku et al | 12 February 2020 | Fujian, China | SIR after lockdown of Wuhan | 1.66 | (0.72‐2.87) |
| 19 | Ku et al | 12 February 2020 | Gansu, China | SIR after lockdown of Wuhan | 2.30 | (1.02‐3.96) |
| 20 | Ku et al | 12 February 2020 | Henan, China | SIR after lockdown of Wuhan | 3.70 | (3.16‐4.25) |
| 21 | Ku et al | 12 February 2020 | Hubei, China | SIR after lockdown of Wuhan | 4.65 | (4.10‐5.15) |
| 22 | Ku et al | 12 February 2020 | Tianjin, China | SIR after lockdown of Wuhan | 2.17 | (1.23‐3.54) |
| 23 | Ahmadi et al | 19 March 2020 | Iran | Logistic growth model | 4.70 | |
| 24 | Kuniya | 15 January 2020‐29 February 2020 | Japan | Least‐square‐based method with Poisson noise | 2.60 | (2.40‐2.80) |
| 25 | Lai et al | 11 February 2020 | World | 2.91 | (2.24‐3.58) | |
| 26 | Li et al | 22 January 2020 | Wuhan | Exponential growth | 2.20 | (1.40–3.90) |
| 27 | Lui et al | 22 January 2020 | World | Exponential growth | 2.90 | (2.32‐3.63) |
| 28 | Lui et al | 22 January 2020 | World | Maximum Likelihood Estimation | 2.92 | (2.28‐3.67) |
| 29 | Luo et al | 13 February 2020 | China (except Hubei) | Develped SEIR model. | 1.17 | (1.15‐1.16) |
| 30 | Luo et al | 13 February 2020 | Hubei Province, China | Develped SEIR model. | 1.49 | (1.48‐1.51) |
| 31 | Majumder et al | 26 January 2020 | Wuhan | Phenomenological modeling | 2.55 | (2.00–3.10) |
| 32 | Meng et al | 12 February 2020 | China (except Hubei) | Devloped SIR Model | 2.81 | (2.72‐2.93) |
| 33 | Muniz‐Rodriguez et al | 19‐29 February 2020 | Iran | Generalized growth model | 3.60 | (3.20‐4.20) |
| 34 | Muniz‐Rodriguez et al | 19‐29 February 2020 | Iran | Growth model with doubling times which is equal ln (2)/r where r is grwoth rate. | 3.58 | (1.29‐8.46) |
| 35 | Park et al | 24 February 2020 | Wuhan | 2.20 | ||
| 36 | Read et al | 1‐22 January 2020 | Wuhan | SEIR | 3.11 | (2.39–4.13) |
| 37 | Remuzzi et al | 08 March 2020 | Italy | Exponential growth | 3.00 | (2.76‐3.25) |
| 38 | Riou et al | 18 January 2020 | China | Computational modelling of potential epidemic trajectories | 2.20 | %90 CI (1.40‐3.80) |
| 39 | Rocklöv et al | 21 January 2020‐19 February 2020 | Diamond Princess Cruise Ship | SEIR Model | 3.70 | |
| 40 | Shao et al | 16 February 2020 | Wuhan | SEIR model and Gamma distribution | 3.12 | |
| 41 | Shao et al | 16 February 2020 | Hubei (without Wuhan) | SEIR model and Gamma distribution | 3.01 | |
| 42 | Shao et al | 16 February 2020 | China (except Hubei) | SEIR model and Gamma distribution | 3.04 | |
| 43 | Shao et al | 16 February 2020 | Beijing | SEIR model and Gamma distribution | 3.25 | |
| 44 | Shao et al | 16 February 2020 | Shanghai | SEIR model and Gamma distribution | 3.24 | |
| 45 | Shao et al | 16 February 2020 | Wuhan | Fudan‐CCDC model | 3.32 | |
| 46 | Shao et al | 16 February 2020 | Hubei (without Wuhan) | Fudan‐CCDC model | 3.37 | |
| 47 | Shao et al | 16 February 2020 | China (except Hubei) | Fudan‐CCDC model | 3.34 | |
| 48 | Shao et al | 16 February 2020 | Beijing | Fudan‐CCDC model | 3.27 | |
| 49 | Shao et al | 16 February 2020 | Shanghai | Fudan‐CCDC model | 3.31 | |
| 50 | Shen et al | 12 December 2019 | Hubei Province, China | By SEIR simulation | 4.71 | (4.50‐4.92) |
| 51 | Shim et al | 26 February 2020 | South Korea | Exponential growth | 1.50 | (1.40‐1.60) |
| 52 | Sugishita et al | 14 January 2020‐28 February 2020 | Japan | SIR Model | 2.50 | (2.43‐2.55) |
| 53 | Sugishita et al | 11 March 2020 | Japan | %35 reduction of basic reproduction number (2.5), 0.65*2.5 = 1.625, by voluntary event cancellation | 1.62 | |
| 54 | Tang et al | 23 January 2020 | China | SEIR Model | 6.47 | (5.71‐7.23) |
| 55 | Tang et al | 03 February 2020 | Shaanxi Province, China | Developed SEIHR Model | 1.69 | |
| 56 | Tapiwa et al | 14 January 2020‐27 February 2020 | Tianjin, China | Bayesian estimation method | 1.59 | (1.42‐1.78) |
| 57 | Tapiwa et al | 21 January 2020‐26 February 2020 | Singapore | Bayesian estimation method | 1.27 | (1.19‐1.36) |
| 58 | Traini et al | 20 February 2020‐11 March 2020 | Italy | SIR Model | 3.40 | |
| 59 | Tuite et al | 24 January 2020 | Wuhan | Disease transmission model | 2.30 | |
| 60 | Wang & You et al | 17 January 2020‐8 February 2020 | Hubei, China | Exponential growth | 3.49 | (3.42‐3.58) |
| 61 | Wang & You et al | 17 January 2020‐8 February 2020 | Hubei, China | Exponential growth (After including control measure) | 2.95 | (2.86‐3.03) |
| 62 | Wang et al | 27 February 2020 | China | 2.75 | (2.00‐3.50) | |
| 63 | WHO | 22 January 2020 | Wuhan | 1.95 | (1.40–2.50) | |
| 64 | Wu et al | 25 January 2020 | Wuhan | Markov Chain Monte Carlo methods | 2.68 | (2.47–2.86) |
| 65 | Wu et al | 10 February 2020 | Henan, China &China(without Hubei) | SIR Model | 2.44 | |
| 66 | Wu et al | 16 February 2020 | Hubei, China | SIR Model | 6.27 | |
| 67 | Yang et al | 26 January 2020 | China | Transmission model | 3.77 | (3.51‐4.05) |
| 68 | Zhang et al | 27 January 2020‐10 February 2020 | Wuhan | SEIAR model | 2.88 | |
| 69 | Zhang et al | 16 February 2020 | Diamond Princess cruise ship | Maximum Likelihood Estimation | 2.28 | (2.06‐2.52) |
| 70 | Zhao & Chen | Before 30 January 2020 | Wuhan | SUQC Model (Stage I) | 4.71 | |
| 71 | Zhao & Chen | After 30 January 2020 | Wuhan | SUQC Model (Stage II) | 0.75 | |
| 72 | Zhao & Chen | After 13 February 2020 | Wuhan | SUQC Model (Stage II) | 0.48 | |
| 73 | Zhao & Chen | Before 30 January 2020 | Hubei (without Wuhan) | SUQC Model (Stage I) | 5.93 | |
| 74 | Zhao & Chen | After 30 January 2020 | Hubei (without Wuhan) | SUQC Model (Stage II) | 0.60 | |
| 75 | Zhao & Chen | Before 30 Jan 2020 | China (excluding Hubei) | SUQC Model (Stage I) | 1.52 | |
| 76 | Zhao & Chen | After 30 January 2020 | China (excluding Hubei) | SUQC Model (Stage II) | 0.57 | |
| 77 | Zhao & Chen | Before 30 January 2020 | Beijing | SUQC Model (Stage I) | 0.88 | |
| 78 | Zhao & Chen | After 30 January 2020 | Beijing | SUQC Model (Stage II) | 0.52 | |
| 79 | Zhao & Chen | Before 30 January 2020 | Shanghai | SUQC Model (Stage I) | 3.62 | |
| 80 | Zhao & Chen | After 30 Jan 2020 | Shanghai | SUQC Model (Stage II) | 0.51 | |
| 81 | Zhao & Chen | Before 30 January 2020 | Guangzhou | SUQC Model (Stage I) | 1.20 | |
| 82 | Zhao & Chen | After 30 Jan 2020 | Guangzhou | SUQC Model (Stage II) | 0.50 | |
| 83 | Zhao & Chen | Before 30 January 2020 | Shenzhen | SUQC Model (Stage I) | 5.93 | |
| 84 | Zhao & Chen | After 30 January 2020 | Shenzhen | SUQC Model (Stage II) | 0.53 | |
| 85 | Zhao et al | 10‐24 January 2020 | China | Exponential growth | 2.24 | (1.96‐2.55) |
| 86 | Zhao et al | 10–24 January 2020 | China | Exponential growth | 3.58 | (2.89‐4.39) |
| 87 | Zhuang et al | 31 January 20 | Republic of Korea | Exponential growth | 2.60 | (2.30‐2.90) |
| 88 | Zhuang et al | 05 February 2020 | Republic of Korea | Exponential growth | 3.20 | (2.90‐3.50) |
| 89 | Zhuang et al | 05 February 2020 | Italy | Exponential growth | 2.60 | (2.30–2.90) |
| 90 | Zhuang et al | 10 February 2020 | Italy | Exponential growth | 3.30 | (3.00‐3.60) |
| 91 | Giordano et al | 20 February 2020‐12 March 2020 | Italy | SIDARTHE model | 2.38 | |
| 92 | Giordano et al | 16 March 2020 | Italy | SIDARTHE model (Public health care) | 1.66 | |
| 93 | Hamidouche et al | 21 March 2020 | Algeria | Mathematical model (Alg‐COVID‐19) | 2.55 | |
| 94 | Klausner et al | 21 February 2020‐20 March 2020 | Israel | Exponential Growth | 2.19 | |
| 95 | Sahafizadeh et al | 28 February 2020 | Iran | SIR Model | 4.86 | |
| 96 | Sahafizadeh et al | 7 March 2020 | Iran | SIR Model | 4.5 | |
| 97 | Sahafizadeh et al | 14 March 2020 | Iran | SIR Model | 4.29 | |
| 98 | Sahafizadeh et al | 18 March 2020 | Iran | SIR Model | 2.10 | |
| 99 | Tian et al | prior to 23 January 2020 | Anhui, China | SEQR model (Phase I) | 2.97 | |
| 100 | Tian et al | 23 January 2020‐6 February 2020 | Anhui, China | SEQR model (Phase II) | 0.86 | |
| 101 | Tian et al | after 6 February 2020 | Anhui, China | SEQR model (Phase III) | 0.57 | |
| 102 | Wang et al | 23 January 2020‐6 March 2020 | Wuhan | S E1E2I1I2HR time‐dependent model | 2.71 | |
| 103 | Crokidakis, N | 26 February 2020 | Brazil | SIQR model | 5.25 |
FIGURE 1Smoothed curve showing the R 0 value in Wuhan city in the period from the 12th of December to the 1st of March 2020. The blue line marks travel restrictions starting on 23 January 2020, red line represents R 0, and grey shading represents 95% confidence intervals of the models estimate
FIGURE 2Dot chart showing the R 0 value estimated in the analysing papers coloured by location of interest in China
FIGURE 3Dot chart showing the R 0 value estimated in the analysing papers coloured by location of interest in the global