Literature DB >> 32426986

Single-Protein Collapse Determines Phase Equilibria of a Biological Condensate.

Han-Yi Chou1, Aleksei Aksimentiev1.   

Abstract

Recent advances in microscopy of living cells have established membraneless organelles as critical elements of diverse biological processes. The body of experimental work suggests that formation of such organelles is driven by liquid-liquid phase separation, a physical process that has been studied extensively for both simple liquids and mixtures of polymers. Here, we combine molecular dynamics simulations with polymer theory to show that the thermodynamic behavior of one particular biomolecular condensate-fused in sarcoma (FUS)-can be quantitatively accounted for at the level of the chain collapse theory. First, we show that a particle-based molecular dynamics model can reproduce known phase separation properties of a FUS condensate, including its critical concentration and susceptibility to mutations. Next, we obtain a polymer physics representation of a FUS condensate by examining the behavior of a single FUS protein as a function of temperature. We use the chain collapse theory to determine the thermodynamic properties of the condensate and to characterize changes in the single-chain conformation at the onset of phase separation. Altogether, our findings suggest that the phase behavior of FUS condensates can be explained by the properties of individual FUS proteins and that the change in the FUS conformation is the main force driving for the phase separation.

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Year:  2020        PMID: 32426986     DOI: 10.1021/acs.jpclett.0c01222

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  8 in total

1.  'RNA modulation of transport properties and stability in phase-separated condensates.

Authors:  Andrés R Tejedor; Adiran Garaizar; Jorge Ramírez; Jorge R Espinosa
Journal:  Biophys J       Date:  2021-11-09       Impact factor: 4.033

2.  Sequence Determines the Switch in the Fibril Forming Regions in the Low-Complexity FUS Protein and Its Variants.

Authors:  Abhinaw Kumar; Debayan Chakraborty; Mauro Lorenzo Mugnai; John E Straub; D Thirumalai
Journal:  J Phys Chem Lett       Date:  2021-09-13       Impact factor: 6.888

3.  Connecting Coil-to-Globule Transitions to Full Phase Diagrams for Intrinsically Disordered Proteins.

Authors:  Xiangze Zeng; Alex S Holehouse; Ashutosh Chilkoti; Tanja Mittag; Rohit V Pappu
Journal:  Biophys J       Date:  2020-06-23       Impact factor: 4.033

4.  Simulation of FUS Protein Condensates with an Adapted Coarse-Grained Model.

Authors:  Zakarya Benayad; Sören von Bülow; Lukas S Stelzl; Gerhard Hummer
Journal:  J Chem Theory Comput       Date:  2020-12-13       Impact factor: 6.006

5.  Valency and Binding Affinity Variations Can Regulate the Multilayered Organization of Protein Condensates with Many Components.

Authors:  Ignacio Sanchez-Burgos; Jorge R Espinosa; Jerelle A Joseph; Rosana Collepardo-Guevara
Journal:  Biomolecules       Date:  2021-02-14

6.  Deciphering how naturally occurring sequence features impact the phase behaviours of disordered prion-like domains.

Authors:  Anne Bremer; Mina Farag; Wade M Borcherds; Ivan Peran; Erik W Martin; Rohit V Pappu; Tanja Mittag
Journal:  Nat Chem       Date:  2021-12-20       Impact factor: 24.274

7.  A method to estimate the size of single-chain nanoparticles under severe crowding conditions.

Authors:  Isabel Asenjo-Sanz; Ester Verde-Sesto; José A Pomposo
Journal:  RSC Adv       Date:  2022-01-10       Impact factor: 3.361

8.  RNA length has a non-trivial effect in the stability of biomolecular condensates formed by RNA-binding proteins.

Authors:  Ignacio Sanchez-Burgos; Jorge R Espinosa; Jerelle A Joseph; Rosana Collepardo-Guevara
Journal:  PLoS Comput Biol       Date:  2022-02-02       Impact factor: 4.475

  8 in total

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