Literature DB >> 32424436

Microorganisms of Lake Baikal-the deepest and most ancient lake on Earth.

Tamara I Zemskaya1, Pedro J Cabello-Yeves2, Olga N Pavlova3, Francisco Rodriguez-Valera2,4.   

Abstract

Lake Baikal (Russia) is the largest (by volume) and deepest lake on Earth. The lake remains relatively pristine due to the low population density around its basin. Being very distant from any marine water body but having a remarkable number of similarities to oceans (depth, oxygen content, oligotrophy) provides a unique model of pelagic microbiota that is submitted to marine-like conditions minus the salt content of the water. It is also a model of lakes located at high latitudes and submitted to yearly ice cover (from January to April). The analysis by different approaches has indeed provided a view of the microbiota of this lake. It contains novel microbes that are closely related to marine groups not known to be present in freshwater like Chloroflexi or Pelagibacter. The deep water mass contains large communities of chemolithotrophs that use ammonia generated in the photic zone or methane from the sediments. KEY POINTS: • The chemical composition and limnic features of the deepest lake on Earth determine the vital activity of microorganisms. • The diversity, ecology, and role of individual taxa of microorganisms were studied using cultivation and molecular methods. • Data of large metagenomic datasets in the epipelagic and bathypelagic layers of the water column in southern Baikal were discussed.

Entities:  

Keywords:  Freshwater microbiome; Lake microbiome; Lake preservation; Metagenomics

Mesh:

Substances:

Year:  2020        PMID: 32424436     DOI: 10.1007/s00253-020-10660-6

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  23 in total

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Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

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Journal:  Mikrobiologiia       Date:  1961 Jan-Feb

3.  [Determination of the taxonomic position of bacteria from Lake Baikal using sequence analysis of 16S rRNA fragments].

Authors:  S I Belikov; M A Grachev; T I Zemskaia; E N Manakova; V V Parfenova
Journal:  Mikrobiologiia       Date:  1996 Nov-Dec

4.  Ecological and genomic features of two widespread freshwater picocyanobacteria.

Authors:  Pedro J Cabello-Yeves; Antonio Picazo; Antonio Camacho; Cristiana Callieri; Riccardo Rosselli; Juan J Roda-Garcia; Felipe H Coutinho; Francisco Rodriguez-Valera
Journal:  Environ Microbiol       Date:  2018-10-02       Impact factor: 5.491

5.  Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

Authors:  Karthik Anantharaman; Christopher T Brown; Laura A Hug; Itai Sharon; Cindy J Castelle; Alexander J Probst; Brian C Thomas; Andrea Singh; Michael J Wilkins; Ulas Karaoz; Eoin L Brodie; Kenneth H Williams; Susan S Hubbard; Jillian F Banfield
Journal:  Nat Commun       Date:  2016-10-24       Impact factor: 14.919

6.  Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs.

Authors:  Pedro J Cabello-Yeves; Rohit Ghai; Maliheh Mehrshad; Antonio Picazo; Antonio Camacho; Francisco Rodriguez-Valera
Journal:  Front Microbiol       Date:  2017-11-02       Impact factor: 5.640

7.  Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs.

Authors:  Pedro J Cabello-Yeves; Jose M Haro-Moreno; Ana-Belen Martin-Cuadrado; Rohit Ghai; Antonio Picazo; Antonio Camacho; Francisco Rodriguez-Valera
Journal:  Front Microbiol       Date:  2017-06-21       Impact factor: 5.640

8.  Cultivation and genomics of the first freshwater SAR11 (LD12) isolate.

Authors:  Michael W Henson; V Celeste Lanclos; Brant C Faircloth; J Cameron Thrash
Journal:  ISME J       Date:  2018-03-29       Impact factor: 10.302

9.  Niche-directed evolution modulates genome architecture in freshwater Planctomycetes.

Authors:  Adrian-Ştefan Andrei; Michaela M Salcher; Maliheh Mehrshad; Pavel Rychtecký; Petr Znachor; Rohit Ghai
Journal:  ISME J       Date:  2019-01-04       Impact factor: 10.302

10.  Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment.

Authors:  Jose M Haro-Moreno; Mario López-Pérez; José R de la Torre; Antonio Picazo; Antonio Camacho; Francisco Rodriguez-Valera
Journal:  Microbiome       Date:  2018-07-10       Impact factor: 14.650

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