Literature DB >> 32424421

Evaluating biomarkers for treatment selection from reproducibility studies.

Xiao Song1, Kevin K Dobbin1.   

Abstract

We consider evaluating new or more accurately measured predictive biomarkers for treatment selection based on a previous clinical trial involving standard biomarkers. Instead of rerunning the clinical trial with the new biomarkers, we propose a more efficient approach which requires only either conducting a reproducibility study in which the new biomarkers and standard biomarkers are both measured on a set of patient samples, or adopting replicated measures of the error-contaminated standard biomarkers in the original study. This approach is easier to conduct and much less expensive than studies that require new samples from patients randomized to the intervention. In addition, it makes it possible to perform the estimation of the clinical performance quickly, since there will be no requirement to wait for events to occur as would be the case with prospective validation. The treatment selection is assessed via a working model, but the proposed estimator of the mean restricted lifetime is valid even if the working model is misspecified. The proposed approach is assessed through simulation studies and applied to a cancer study.
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Entities:  

Keywords:  Conditional score; Measurement error; Predictive biomarker; SIMEX; Survival

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Year:  2022        PMID: 32424421      PMCID: PMC8974242          DOI: 10.1093/biostatistics/kxaa018

Source DB:  PubMed          Journal:  Biostatistics        ISSN: 1465-4644            Impact factor:   5.899


  21 in total

1.  Regression analysis when covariates are regression parameters of a random effects model for observed longitudinal measurements.

Authors:  C Y Wang; N Wang; S Wang
Journal:  Biometrics       Date:  2000-06       Impact factor: 2.571

2.  Causal inference on the difference of the restricted mean lifetime between two groups.

Authors:  P Y Chen; A A Tsiatis
Journal:  Biometrics       Date:  2001-12       Impact factor: 2.571

3.  Joint modelling of longitudinal measurements and event time data.

Authors:  R Henderson; P Diggle; A Dobson
Journal:  Biostatistics       Date:  2000-12       Impact factor: 5.899

4.  Simultaneously modelling censored survival data and repeatedly measured covariates: a Gibbs sampling approach.

Authors:  C L Faucett; D C Thomas
Journal:  Stat Med       Date:  1996-08-15       Impact factor: 2.373

5.  A robust method for estimating optimal treatment regimes.

Authors:  Baqun Zhang; Anastasios A Tsiatis; Eric B Laber; Marie Davidian
Journal:  Biometrics       Date:  2012-05-02       Impact factor: 2.571

6.  Evaluating markers for selecting a patient's treatment.

Authors:  Xiao Song; Margaret Sullivan Pepe
Journal:  Biometrics       Date:  2004-12       Impact factor: 2.571

7.  Magee Equation 3 predicts pathologic response to neoadjuvant systemic chemotherapy in estrogen receptor positive, HER2 negative/equivocal breast tumors.

Authors:  Daniel J Farrugia; Alessandra Landmann; Li Zhu; Emilia J Diego; Ronald R Johnson; Marguerite Bonaventura; Atilla Soran; David J Dabbs; Beth Z Clark; Shannon L Puhalla; Rachel C Jankowitz; Adam M Brufsky; Barry C Lembersky; Gretchen M Ahrendt; Priscilla F McAuliffe; Rohit Bhargava
Journal:  Mod Pathol       Date:  2017-05-26       Impact factor: 7.842

8.  Measuring the performance of markers for guiding treatment decisions.

Authors:  Holly Janes; Margaret S Pepe; Patrick M Bossuyt; William E Barlow
Journal:  Ann Intern Med       Date:  2011-02-15       Impact factor: 25.391

9.  Robust best linear estimator for Cox regression with instrumental variables in whole cohort and surrogates with additive measurement error in calibration sample.

Authors:  Ching-Yun Wang; Xiao Song
Journal:  Biom J       Date:  2016-08-22       Impact factor: 2.207

10.  An approach to evaluating and comparing biomarkers for patient treatment selection.

Authors:  Holly Janes; Marshall D Brown; Ying Huang; Margaret S Pepe
Journal:  Int J Biostat       Date:  2014       Impact factor: 0.968

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  1 in total

1.  BioPETsurv: Methodology and open source software to evaluate biomarkers for prognostic enrichment of time-to-event clinical trials.

Authors:  Si Cheng; Kathleen F Kerr; Heather Thiessen-Philbrook; Steven G Coca; Chirag R Parikh
Journal:  PLoS One       Date:  2020-09-18       Impact factor: 3.240

  1 in total

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