Literature DB >> 32417726

Sequenced-based French population data from 169 unrelated individuals with Verogen's ForenSeq DNA signature prep kit.

Anna Delest1, Dominique Godfrin2, Yann Chantrel2, Ayhan Ulus2, Julien Vannier2, Magalie Faivre2, Clémence Hollard2, François-Xavier Laurent3.   

Abstract

Massively Parallel Sequencing (MPS) applied to forensic genetics allows the simultaneous analysis of hundreds of genetic markers and the access to full amplicon sequences which help to increase available allele diversity. Meanwhile, sequence variation within the repeat regions represents the majority of the allele diversity, flanking regions adjacent to the repeat core provide an additional degree of variation. The forensic genetics community needs access to population data, from relevant parts of the world that contain this new sequence diversity in order to perform statistical calculations. In this study, we report sequence-based Short Tandem Repeat (STR) and identity Single Nucleotide Polymorphism (iSNPs) allele data for 169 French individuals across 58 STRs and 92 SNPs included in the Verogen ForenSeq DNA Signature Prep kit. 42 STRs out of 58 showed an increased number of alleles due to sequence variation in the repeat motif and/or the flanking regions. D9S1122 showed the largest overall gain with an increase of observed heterozygosities of almost 25 %. The combined match probability combining 27 autosomal STRs and 91 identity SNPs was 1.11E-69. Sequence-based allele frequencies included in this publication will help forensic laboratories to increase the power of discrimination for identification, kinship analysis and mixture interpretation.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Autosomal STRs; Combined random match probability; ForenSeq DNA; France; Identity SNPs; Kinship analysis; Massively parallel sequencing; Population data; Signature prep kit; Verogen

Year:  2020        PMID: 32417726     DOI: 10.1016/j.fsigen.2020.102304

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  5 in total

1.  Characterization of 58 STRs and 94 SNPs with the ForenSeq™ DNA signature prep kit in Mexican-Mestizos from the Monterrey city (Northeast, Mexico).

Authors:  José Alonso Aguilar-Velázquez; Miguel Ángel Duran-Salazar; Miranda Fabiola Córdoba-Mercado; Carolina Elena Coronado-Avila; Orlando Salas-Salas; Gabriela Martinez-Cortés; Ferrán Casals; Francesc Calafell; Benito Ramos-González; Héctor Rangel-Villalobos
Journal:  Mol Biol Rep       Date:  2022-06-03       Impact factor: 2.742

2.  Forensic Feature Exploration and Comprehensive Genetic Insights Into Yugu Ethnic Minority and Northern Han Population via a Novel NGS-Based Marker Set.

Authors:  Qiong Lan; Congying Zhao; Chong Chen; Hui Xu; Yating Fang; Hongbing Yao; Bofeng Zhu
Journal:  Front Genet       Date:  2022-04-27       Impact factor: 4.772

3.  Development and validation of a novel 133-plex forensic STR panel (52 STRs and 81 Y-STRs) using single-end 400 bp massive parallel sequencing.

Authors:  Haoliang Fan; Lingxiang Wang; Changhui Liu; Xiaoyu Lu; Xuding Xu; Kai Ru; Pingming Qiu; Chao Liu; Shao-Qing Wen
Journal:  Int J Legal Med       Date:  2021-11-06       Impact factor: 2.791

4.  Massively parallel sequencing of 25 short tandem repeat loci including the SE33 marker in Koreans.

Authors:  Ja Hyun Lee; Jeongyong Kim; Hyojeong Kim; Hyo Sook Kim; Eungsoo Kim
Journal:  Genes Genomics       Date:  2021-01-22       Impact factor: 1.839

5.  Concordance and characterization of massively parallel sequencing at 58 STRs in a Tibetan population.

Authors:  Hui Li; Cheng Zhang; Guoqing Song; Ke Ma; Yu Cao; Xueying Zhao; Qinrui Yang; Jianhui Xie
Journal:  Mol Genet Genomic Med       Date:  2021-02-25       Impact factor: 2.183

  5 in total

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