Literature DB >> 32417458

A glance into the evolution of template-free protein structure prediction methodologies.

Surbhi Dhingra1, Ramanathan Sowdhamini2, Frédéric Cadet3, Bernard Offmann4.   

Abstract

Prediction of protein structures using computational approaches has been explored for over two decades, paving a way for more focused research and development of algorithms in comparative modelling, ab intio modelling and structure refinement protocols. A tremendous success has been witnessed in template-based modelling protocols, whereas strategies that involve template-free modelling still lag behind, specifically for larger proteins (>150 a.a.). Various improvements have been observed in ab initio protein structure prediction methodologies overtime, with recent ones attributed to the usage of deep learning approaches to construct protein backbone structure from its amino acid sequence. This review highlights the major strategies undertaken for template-free modelling of protein structures while discussing few tools developed under each strategy. It will also briefly comment on the progress observed in the field of ab initio modelling of proteins over the course of time as seen through the evolution of CASP platform.
Copyright © 2020 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.

Entities:  

Keywords:  Ab initio modelling; Artificial Intelligence; Protein structure prediction; Template-Free modelling

Mesh:

Substances:

Year:  2020        PMID: 32417458     DOI: 10.1016/j.biochi.2020.04.026

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  5 in total

1.  Improved 3-D Protein Structure Predictions using Deep ResNet Model.

Authors:  S Geethu; E R Vimina
Journal:  Protein J       Date:  2021-09-12       Impact factor: 2.371

Review 2.  Protein Function Analysis through Machine Learning.

Authors:  Chris Avery; John Patterson; Tyler Grear; Theodore Frater; Donald J Jacobs
Journal:  Biomolecules       Date:  2022-09-06

Review 3.  An Overview of Alphafold's Breakthrough.

Authors:  Ştefan-Bogdan Marcu; Sabin Tăbîrcă; Mark Tangney
Journal:  Front Artif Intell       Date:  2022-06-09

4.  Guardians of the Cell: State-of-the-Art of Membrane Proteins from a Computational Point-of-View.

Authors:  Nícia Rosário-Ferreira; Catarina Marques-Pereira; Raquel P Gouveia; Joana Mourão; Irina S Moreira
Journal:  Methods Mol Biol       Date:  2021

5.  ProtCHOIR: a tool for proteome-scale generation of homo-oligomers.

Authors:  Pedro H M Torres; Artur D Rossi; Tom L Blundell
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 11.622

  5 in total

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