Literature DB >> 32414930

Kinetic diversity of amyloid oligomers.

Alexander J Dear1,2, Thomas C T Michaels1,2, Georg Meisl1, David Klenerman1,3, Si Wu4,5, Sarah Perrett4,5, Sara Linse6, Christopher M Dobson1, Tuomas P J Knowles7,8.   

Abstract

The spontaneous assembly of proteins into amyloid fibrils is a phenomenon central to many increasingly common and currently incurable human disorders, including Alzheimer's and Parkinson's diseases. Oligomeric species form transiently during this process and not only act as essential intermediates in the assembly of new filaments but also represent major pathogenic agents in these diseases. While amyloid fibrils possess a common, defining set of physicochemical features, oligomers, by contrast, appear much more diverse, and their commonalities and differences have hitherto remained largely unexplored. Here, we use the framework of chemical kinetics to investigate their dynamical properties. By fitting experimental data for several unrelated amyloidogenic systems to newly derived mechanistic models, we find that oligomers present with a remarkably wide range of kinetic and thermodynamic stabilities but that they possess two properties that are generic: they are overwhelmingly nonfibrillar, and they predominantly dissociate back to monomers rather than maturing into fibrillar species. These discoveries change our understanding of the relationship between amyloid oligomers and amyloid fibrils and have important implications for the nature of their cellular toxicity.

Entities:  

Keywords:  Alzheimer’s; amyloid; kinetics; modeling; oligomers

Mesh:

Substances:

Year:  2020        PMID: 32414930      PMCID: PMC7275774          DOI: 10.1073/pnas.1922267117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  49 in total

1.  An analytical solution to the kinetics of breakable filament assembly.

Authors:  Tuomas P J Knowles; Christopher A Waudby; Glyn L Devlin; Samuel I A Cohen; Adriano Aguzzi; Michele Vendruscolo; Eugene M Terentjev; Mark E Welland; Christopher M Dobson
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

2.  Solution NMR studies of recombinant Aβ(1-42): from the presence of a micellar entity to residual β-sheet structure in the soluble species.

Authors:  Marielle Aulikki Wälti; Julien Orts; Beat Vögeli; Silvia Campioni; Roland Riek
Journal:  Chembiochem       Date:  2015-02-11       Impact factor: 3.164

3.  Nucleation-conversion-polymerization reactions of biological macromolecules with prenucleation clusters.

Authors:  Gonzalo A Garcia; Samuel I A Cohen; Christopher M Dobson; Tuomas P J Knowles
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-03-24

4.  Natural oligomers of the amyloid-beta protein specifically disrupt cognitive function.

Authors:  James P Cleary; Dominic M Walsh; Jacki J Hofmeister; Ganesh M Shankar; Michael A Kuskowski; Dennis J Selkoe; Karen H Ashe
Journal:  Nat Neurosci       Date:  2004-12-19       Impact factor: 24.884

5.  Neurodegenerative disease: amyloid pores from pathogenic mutations.

Authors:  Hilal A Lashuel; Dean Hartley; Benjamin M Petre; Thomas Walz; Peter T Lansbury
Journal:  Nature       Date:  2002-07-18       Impact factor: 49.962

6.  Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases.

Authors:  Monica Bucciantini; Elisa Giannoni; Fabrizio Chiti; Fabiana Baroni; Lucia Formigli; Jesús Zurdo; Niccolò Taddei; Giampietro Ramponi; Christopher M Dobson; Massimo Stefani
Journal:  Nature       Date:  2002-04-04       Impact factor: 49.962

7.  Direct Observation of Oligomerization by Single Molecule Fluorescence Reveals a Multistep Aggregation Mechanism for the Yeast Prion Protein Ure2.

Authors:  Jie Yang; Alexander J Dear; Thomas C T Michaels; Christopher M Dobson; Tuomas P J Knowles; Si Wu; Sarah Perrett
Journal:  J Am Chem Soc       Date:  2018-02-07       Impact factor: 15.419

8.  Direct observation of prion protein oligomer formation reveals an aggregation mechanism with multiple conformationally distinct species.

Authors:  Jason C Sang; Ji-Eun Lee; Alexander J Dear; Suman De; Georg Meisl; Alana M Thackray; Raymond Bujdoso; Tuomas P J Knowles; David Klenerman
Journal:  Chem Sci       Date:  2019-03-25       Impact factor: 9.825

9.  Oligomer Diversity during the Aggregation of the Repeat Region of Tau.

Authors:  Magnus Kjaergaard; Alexander J Dear; Franziska Kundel; Seema Qamar; Georg Meisl; Tuomas P J Knowles; David Klenerman
Journal:  ACS Chem Neurosci       Date:  2018-07-17       Impact factor: 4.418

10.  Quantifying Co-Oligomer Formation by α-Synuclein.

Authors:  Marija Iljina; Alexander J Dear; Gonzalo A Garcia; Suman De; Laura Tosatto; Patrick Flagmeier; Daniel R Whiten; Thomas C T Michaels; Daan Frenkel; Christopher M Dobson; Tuomas P J Knowles; David Klenerman
Journal:  ACS Nano       Date:  2018-10-29       Impact factor: 15.881

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  30 in total

1.  Engineering of a protein probe with multiple inputs and multiple outputs for evaluation of alpha synuclein aggregation states.

Authors:  Edward Chau; Jin Ryoun Kim
Journal:  Biochem Eng J       Date:  2021-11-29       Impact factor: 3.978

Review 2.  Mechanistic Models of Protein Aggregation Across Length-Scales and Time-Scales: From the Test Tube to Neurodegenerative Disease.

Authors:  Georg Meisl; Tuomas P J Knowles; David Klenerman
Journal:  Front Neurosci       Date:  2022-06-30       Impact factor: 5.152

3.  Measuring the Size and Spontaneous Fluctuations of Amyloid Aggregates with Fluorescence Correlation Spectroscopy.

Authors:  Vicky Vishvakarma; Sudipta Maiti
Journal:  Methods Mol Biol       Date:  2022

4.  Multi-length scale structural investigation of lysozyme self-assembly.

Authors:  Sara Catalini; Viviane Lutz-Bueno; Mattia Usuelli; Michael Diener; Andrea Taschin; Paolo Bartolini; Paolo Foggi; Marco Paolantoni; Raffaele Mezzenga; Renato Torre
Journal:  iScience       Date:  2022-06-10

5.  Atomic Structures of Amyloid-β Oligomers Illuminate a Neurotoxic Mechanism.

Authors:  April L Darling; James Shorter
Journal:  Trends Neurosci       Date:  2020-08-10       Impact factor: 13.837

Review 6.  Protein Aggregation Landscape in Neurodegenerative Diseases: Clinical Relevance and Future Applications.

Authors:  Niccolò Candelise; Silvia Scaricamazza; Illari Salvatori; Alberto Ferri; Cristiana Valle; Valeria Manganelli; Tina Garofalo; Maurizio Sorice; Roberta Misasi
Journal:  Int J Mol Sci       Date:  2021-06-02       Impact factor: 5.923

Review 7.  The existence of Aβ strains and their potential for driving phenotypic heterogeneity in Alzheimer's disease.

Authors:  Heather H C Lau; Martin Ingelsson; Joel C Watts
Journal:  Acta Neuropathol       Date:  2020-08-02       Impact factor: 17.088

8.  From reaction kinetics to dementia: A simple dimer model of Alzheimer's disease etiology.

Authors:  Michael R Lindstrom; Manuel B Chavez; Elijah A Gross-Sable; Eric Y Hayden; David B Teplow
Journal:  PLoS Comput Biol       Date:  2021-07-19       Impact factor: 4.475

9.  Correlative optical photothermal infrared and X-ray fluorescence for chemical imaging of trace elements and relevant molecular structures directly in neurons.

Authors:  Nadja Gustavsson; Agnes Paulus; Isak Martinsson; Anders Engdahl; Kadda Medjoubi; Konstantin Klementiev; Andrea Somogyi; Tomas Deierborg; Ferenc Borondics; Gunnar K Gouras; Oxana Klementieva
Journal:  Light Sci Appl       Date:  2021-07-22       Impact factor: 17.782

Review 10.  Mechanistic roles for altered O-GlcNAcylation in neurodegenerative disorders.

Authors:  Aaron T Balana; Matthew R Pratt
Journal:  Biochem J       Date:  2021-07-30       Impact factor: 3.766

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