| Literature DB >> 32413971 |
Aneta Ścieżyńska1,2,3, Marta Soszyńska2, Michał Komorowski2, Anna Podgórska4, Natalia Krześniak5, Aleksandra Nogowska1, Martyna Smolińska1, Kamil Szulborski6, Jacek P Szaflik6, Bartłomiej Noszczyk5, Monika Ołdak1,3, Jacek Malejczyk1,2,3.
Abstract
ABCA4 gene mutations are the cause of a spectrum of ABCA4 retinopathies, and the most common juvenile macular degeneration is called Stargardt disease. ABCA4 has previously been observed almost exclusively in the retina. Therefore, studying the functional consequences of ABCA4 variants has required advanced molecular analysis techniques. The aim of the present study was to evaluate whether human hair follicles may be used for molecular analysis of the ABCA4 gene splice-site variants in patients with ABCA4 retinopathies. We assessed ABCA4 expression in hair follicles and skin at mRNA and protein levels by means of real-time PCR and Western blot analyses, respectively. We performed cDNA sequencing to reveal the presence of full-length ABCA4 transcripts and analyzed ABCA4 transcripts from three patients with Stargardt disease carrying different splice-site ABCA4 variants: c.5312+1G>A, c.5312+2T>G and c.5836-3C>A. cDNA analysis revealed that c.5312+1G>A, c.5312+2T>G variants led to the skipping of exon 37, and the c.5836-3C>A variant resulted in the insertion of 30 nucleotides into the transcript. Our results strongly argue for the use of hair follicles as a model for the molecular analysis of the pathogenicity of ABCA4 variants in patients with ABCA4 retinopathies.Entities:
Keywords: ABCA4 gene mutations; ABCA4 retinopathies; Stargardt disease; hair follicles; molecular analysis; splice-site variants
Mesh:
Substances:
Year: 2020 PMID: 32413971 PMCID: PMC7279462 DOI: 10.3390/ijms21103430
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Expression of the ABCA4 mRNA in hair follicles, skin lysates, as well as keratinocytes, dermal fibroblasts and melanocytes as measured by qRT-PCR for TaqMan probe Hs00979586_m1 (ABCA4 exons 35–36). (A) Expression of the ABCA4 gene in the isolated hair follicles was significantly higher than in total skin lysates. (B) Relatively very low expression of the ABCA4 gene was detected in fibroblasts, keratinocytes and melanocytes. ∗∗∗∗ p < 0.0001 as calculated by Mann-Whitney U test.
Average Ct of ABCA4 gene expression in hair follicles, skin samples, keratinocytes, dermal fibroblasts and melanocytes.
| Exon Number | 3–4 | 10–11 | 20–21 | 29–30 | 35–36 | 40–41 | 49–50 |
|---|---|---|---|---|---|---|---|
| Hair follicles ( | 33.72 | 28.18 | 28.53 | 27.65 | 27.22 | 27.05 | 27.28 |
| Total skin samples ( | 37.77 | 32.51 | 33.17 | Not tested | 33.48 | Not tested | 31.92 |
| Keratinocytes ( | 35.07 | 34.42 | 34.15 | Not tested | 33.02 | Not tested | 34.12 |
| Fibroblasts ( | 33.67 | 32.75 | 32.54 | Not tested | 32.15 | Not tested | 31.48 |
| Melanocytes ( | 37.87 | 37.07 | 37.01 | Not tested | 36.29 | Not tested | 38.46 |
Figure 2Expression of the ABCA4 gene in hair follicles, skin cells and skin lysates measured at the protein level with Western blot assay. HF, hair follicle; Skin, skin sample positive for ABCA4 mRNA; K, keratinocytes; F, fibroblasts; M, melanocytes; C(+), retinoblastoma lysate; C(–), skin sample negative for ABCA4 mRNA; Std, broad-range protein standard.
Figure 3Electropherograms of the mutated ABCA4 transcripts isolated from hair follicles. (A,B) Mutations c.5312+1G>A and c.5312+2T>G result in the exon 37 skipping. Boundaries of exon 36 and 38 are marked in yellow. (C) Mutation c.5836-3C>A results in an insertion of 30 nucleotides (marked purple) into the ABCA4 transcript between the 41st and 42nd exon of the ABCA4 transcript.
Figure 4Expression of the ABCA4 gene in hair follicles (HF) of patients with Stargardt disease (n = 3) and healthy controls (n = 8) as measured by qRT-PCR for TaqMan probe Hs00979586_m1 (ABCA4 exons 35–36). ∗∗∗ p = 0.0001 as evaluated by Mann-Whitney U test.
Localization of the TaqMan probes within the ABCA4 gene exons.
| TaqMan® Probes | Exon Boundary |
|---|---|
| Hs00979588_m1 | 3–4 |
| Hs00979567_m1 | 10–11 |
| Hs00979574_m1 | 20–21 |
| Hs00979581_m1 | 29–30 |
| Hs00979586_m1 | 35–36 |
| Hs00979589_m1 | 40–41 |
| Hs00979594_m1 | 49–50 |
List of set of primers and annealing temperatures (Ta) used during ABCA4 transcript amplification.
| Forward Primer (5′–3′) | Reverse Primer (5′–3′) | Amplicon Length | Ta | |
|---|---|---|---|---|
| 2–4 | GGAACTCGTGTGGCCTTTATCTTTATT | GTCCATGAATTGGGACAAGATGTGTAG | 331 | 58.2 |
| 4–8 | AGCTACACATCTTGTCCCAATTCATGG | TGTCTTCATACCAGTTGAAGGAGAGCA | 645 | 58.2 |
| 8–12 | CTCGGGTGCTCTCCTTCAACTGGTAT | TGGTAGAGAGCTGGTCCAGGGATACAT | 698 | 61.3 |
| 12–15 | GTGCCCTCTCTCTACTGGAGGAAAACA | AGACTGGCCTTGGAGAAGAAGGTGCT | 670 | 61.3 |
| 15–20 | CACCTTCTTCTCCAAGGCCAGTCTG | CAGGATGTTGTGCTGTGGACACATG | 787 | 61 |
| 20–25 | CACAGCACAACATCCTGTTCCAC | GAAATTCCAAAACTGCTGAGACCAA | 769 | 57.1 |
| 25–30 | GGCTGACCTTGGTCTCAGCAGT | CCTGCAGGATGGTGAAGGGTTG | 706 | 58.6 |
| 30–36 | CACAGGTCAACCCTTCACCATCCTG | TTGGATTTGTTCACCCGCTCCTGGATCA | 691 | 61 |
| 36–41 | ATCTGCGTGATTTTCTCCATGTCCTT | ATCATCTTCATCAACAATGGGCTCCT | 708 | 56.4 |
| 40–46 | GAAGGGGTGGTGTACTTCCTCCTGAC | CCTTCTCTGATGATGCTCACGATGAC | 707 | 62.7 |
| 44–49 | GTCCATCAAAATATGGGCTACTGTCCT | CTGGTCCAGTGTGGTCTGTGTGACT | 702 | 61 |