Literature DB >> 32413170

Low level of antifungal resistance of Candida glabrata blood isolates in Turkey: Fluconazole minimum inhibitory concentration and FKS mutations can predict therapeutic failure.

Amir Arastehfar1,2, Farnaz Daneshnia1, Mohammadreza Salehi3, Melike Yaşar4, Tuğrul Hoşbul5, Macit Ilkit6, Weihua Pan1, Ferry Hagen2,7,8, Nazlı Arslan9, Hatice Türk-Dağı10, Süleyha Hilmioğlu-Polat4, David S Perlin11, Cornelia Lass-Flörl12.   

Abstract

BACKGROUND: Candida glabrata is the third leading cause of candidaemia in Turkey; however, the data regarding antifungal resistance mechanisms and genotypic diversity in association with their clinical implication are limited.
OBJECTIVES: To assess genotypic diversity, antifungal susceptibility and mechanisms of drug resistance of C glabrata blood isolates and their association with patients' outcome in a retrospective multicentre study. PATIENTS/
METHODS: Isolates from 107 patients were identified by ITS sequencing and analysed by multilocus microsatellite typing, antifungal susceptibility testing, and sequencing of PDR1 and FKS1/2 hotspots (HSs).
RESULTS: Candida glabrata prevalence in Ege University Hospital was twofold higher in 2014-2019 than in 2005-2014. Six of the analysed isolates had fluconazole MICs ≥ 32 µg/mL; of them, five harboured unique PDR1 mutations. Although echinocandin resistance was not detected, three isolates had mutations in HS1-Fks1 (S629T, n = 1) and HS1-Fks2 (S663P, n = 2); one of the latter was also fluconazole-resistant. All patients infected with isolates carrying HS-FKS mutations and/or demonstrating fluconazole MIC ≥ 32 µg/mL (except one without clinical data) showed therapeutic failure (TF) with echinocandin and fluconazole; seven such isolates were collected in Ege (n = 4) and Gulhane (n = 3) hospitals and six detected recently. Among 34 identified genotypes, none were associated with mortality or enriched for fluconazole-resistant isolates.
CONCLUSION: Antifungal susceptibility testing should be supplemented with HS-FKS sequencing to predict TF for echinocandins, whereas fluconazole MIC ≥ 32 µg/mL may predict TF. Recent emergence of C glabrata isolates associated with antifungal TF warrants future comprehensive prospective studies in Turkey.
© 2020 The Authors. Mycoses published by Blackwell Verlag GmbH.

Entities:  

Keywords:  zzm321990Candida glabratazzm321990; antifungal agents; candidaemia; drug resistance; genotype; molecular typing

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Year:  2020        PMID: 32413170      PMCID: PMC7497236          DOI: 10.1111/myc.13104

Source DB:  PubMed          Journal:  Mycoses        ISSN: 0933-7407            Impact factor:   4.377


INTRODUCTION

Candida glabrata is the second leading cause of candidaemia in USA, Canada, Australia and some Scandinavian countries , , , , , and the first cause of candidaemia in intensive care units and patients with haematological malignancies and solid tumours. , Compared to the other Candida species, C glabrata is much more tolerant to antifungals, which allows it to rapidly develop antifungal resistance during the course of antifungal therapy. , , , , , , , , , Indeed, C glabrata isolates resistant to azoles or echinocandins and even those demonstrating multidrug resistance are increasingly being identified in clinical settings. , , It was shown that resistance to azoles and increase of virulence in C glabrata is mostly caused by gain‐of‐function mutations in the yeast Zn2Cys6 transcription factor PDR1, which lead to the overexpression of efflux pumps, whereas resistance to echinocandins is associated with non‐synonymous mutations in hotspots (HSs) 1 and 2 of the FKS1 and FKS2 genes encoding glucan synthases. Regarding the clinical prognosis, some studies indicate that sequencing of HSs in FKS1/2 more accurately predicts therapeutic failure (TF) of echinocandins than phenotypic antifungal susceptibility testing (AFST). , Candida glabrata is an endogenous opportunistic pathogen normally residing in the human gastrointestinal tract and causing bloodstream infections in immunocompromised hosts. However, some molecular typing studies indicate that a possibility of horizontal transfer, suggesting that clonal enrichment of fluconazole‐resistant C glabrata isolates cannot be excluded. , Furthermore, it has been shown that some C glabrata genotypes are associated with a higher mortality rate, , reinforcing the importance of strain profiling using genotyping techniques in clinical practice. Candida glabrata is the third leading cause of candidaemia in Turkey, where it shows a low level of antifungal resistance as evidenced by a recent multicentre candidaemia study (1997‐2017). However, the correlation of important clinical parameters and microbiological properties such as genotypic diversity and molecular mechanisms underlying azole and echinocandin resistance has not been investigated. The current retrospective multicentre study was conducted to address these gaps in the knowledge regarding C glabrata blood isolates in Turkey.

MATERIALS AND METHODS

Isolates, growth conditions, and identification

Non‐duplicate C glabrata blood isolates (n = 107) recovered from patients with candidaemia (n = 107) were collected in five clinical centres in Turkey including Ege (n = 54), Gulhane (n = 25), Dokuz Eylul (n = 18), Selcuk (n = 6) and Istanbul (n = 4) University Hospitals. Ege University Hospital with 1,800 beds was the largest institution, followed by Istanbul University Hospital, Gulhane Training and Research Hospital and Dokuz Eylul University Hospital (1,100 beds each), and Selcuk University Hospital (900 beds). Hospitals included in the current study typically use echinocandins as the first‐line therapy for treatment of candidaemia due to C glabrata. Isolates from Ege and Gulhane hospitals were collected from 2005– to 2019, whereas those from the other centres were collected from 2015– to 2019. Isolates were cultured on Sabouraud dextrose agar (Merck, Darmstadt, Germany) plates for 48 h at 35°C and further verified by growth in CHROMAgar Candida medium (CAC, Becton Dickinson) to ensure their purity. Identification was performed by internal transcribed spacer (ITS) rDNA sequencing using ITS1 and ITS4 primers. Persistence of fever and isolation of C glabrata from blood cultures despite antifungal treatment were considered as TF.

AFST

All isolates (n = 107) were tested for drug sensitivity using the broth microdilution protocol suggested by CLSI M27‐A3/S4. , The following drugs were used: fluconazole (FLZ), voriconazole (VRZ), itraconazole (ITZ), amphotericin B (AMB) (all from Sigma‐Aldrich), micafungin (MCF; Astellas, Munich, Germany) and anidulafungin (AND; Pfizer); caspofungin (CSP) was not included in AFST experiments because of interlaboratory variations. Plates were incubated at 35°C for 24 h, and drug minimum inhibitory concentrations (MICs) were determined by visual examination, and Candida parapsilosis (ATCC 22 019) and Candida krusei (ATCC 6258) were used for quality control purposes. FLZ resistance was scored at the MIC ≥ 64 µg/mL, and lower MIC values were considered to define susceptible‐dose dependent isolates. MCF‐ and AND‐resistant isolates were defined at the MICs ≥ 0.25 µg/mL and ≥0.5 µg/mL, respectively. Resistance to VRZ, ITZ and AMB was reported based on epidemiological cut‐off values, and MICs > 0.5 µg/mL, 2 µg/mL and 2 µg/mL, respectively, were considered to indicate non‐wild‐type isolates.

Sequencing of PDR1 and HS1/HS2 of FKS1 and FKS2

PCR amplification and sequencing of the PDR1 gene and HS1/2 regions of the FKS1/2 genes were performed as previously described. , Sequences were assembled and edited using SeqMan Pro software (DNASTAR) and aligned using MEGA 7.0. The genome of C glabrata CBS 138 (http://www.candidagenome.org) was used as a wild‐type reference.

Multilocus microsatellite genotyping (MMT)

The genotypic diversity of C glabrata isolates was evaluated by MMT based on three markers: MT1, RPM2 and ERG3. Isolates that differed in a single locus among the six alleles tested were considered to belong to the same genotype. Bionumerics software v7.6 (Applied Math, Sint‐Martens‐Latem, Belgium) was used for data analysis and dendrogram construction by the unweighted‐pair group method using average linkages.

Statistical analysis

The data were statistically evaluated using SPSS v.24 (SPSS Inc). The two‐tailed chi‐square test and logistic regression were used to analyse the association between patient's outcome (death or survival) and clusters obtained by MMT. As each of the numerous identified genotypes was identified for only few isolates, clusters comprising similar genotypes were used to increase statistical power. To assess the association between clusters and FLZ MIC values, which were not normally distributed, a non‐parametric Kruskal‐Wallis test was used. Statistical significance was defined at α < 0.05.

Availability of sequencing data

All sequences generated for PDR1 and HSs of FKS1 and FKS2 were submitted to GenBank (https://www.ncbi.nlm.nih.gov/genbank/) under the following accession numbers: MN985836‐MN985942 (PDR1), MN985943‐MN986049 (HS1FKS1), MN986050‐MN986156 (HS2‐FKS1), MN986157‐MN986262 (HS1FKS2), and MN986263‐MN986369 (HS2‐FKS2).

Ethics statement

The authors confirm that the ethical policies of the journal, as noted on the journal's author guidelines page, have been adhered to and the appropriate ethical review committee approval (number 20‐2T/30) has been received.

RESULTS AND DISCUSSION

In this study, we performed comprehensive evaluation of C glabrata blood isolates collected in five centres in Turkey; analysis included genotypic diversity, antifungal susceptibility and molecular features defining resistance to azoles and echinocandins. We found a low level of antifungal resistance among isolates, which is consistent with a previous study performed in Turkey, and showed that sequencing together with AFST could provide more reliable data to guide clinicians in their choice of treatment for patients with C glabrata candidaemia. Together with similar studies conducted in China, , USA, South Korea, India and Iran, our study should contribute to better understanding of clinical and microbiological profiles of C glabrata bloodstream isolates. Candidaemia was equally prevalent in men (n = 53) and women (n = 53) (data missing for one patient). The median age of the patients was 60 years (range, 0‐87 years) (data missing for 12 patients), which is consistent with the fact that elderly patients are more prone to developing C glabrata candidaemia. , The vast majority of the patients were hospitalised in intensive care units (n = 28; 26.2%) and surgical wards (n = 25; 23.4%) followed by other wards (n = 54; 50.4%). The antifungal treatment data were unavailable for 46 patients; based on the available data, echinocandins were used in 39.2% of cases (n = 42; for 11 patients in combination with other antifungals), AMB in 14% (n = 15; for eight patients in combination) and azoles in 8.4% (n = 9; for three patients in combination). This statistics is in contrast with that in Iran and India, where the majority of patients with candidaemia are treated with azoles. The clinical outcome data were unavailable for 11 patients; based on the available data, the mortality rate was calculated as 55.1% (59/107), which is close to those observed in Austria and Germany but much higher than those in Iran and the USA. Interestingly, the number of C glabrata isolates in Ege University Hospital almost doubled during 2015‐2019 (n = 35) compared to 2005‐2014 (n = 19). A similar increasing trend was reported in other studies , and was linked to the disproportionate use of antifungals, which, however, we could not prove because of the scarcity of antifungal treatment data for the 2005‐2014 period. Antifungal resistance was observed only for FLZ (n = 4, MIC ≥ 64 µg/mL); furthermore, FLZ MIC = 32 µg/mL was observed for two isolates (Table 1 and Table S1). All 107 isolates exhibited the susceptibility of the wild type for VRZ, ITZ and AMB and two isolates (G53 and G103) showed intermediate susceptibility to MCF and AND (0.125 µg/mL and 0.25 µg/mL, respectively). The low rate or apparent absence of antifungal resistance observed in our study is consistent with a previous multicentre candidaemia study conducted in Turkey as well as reports from several other Asian, , , , , South American and European , , , countries; however, it is in contrast with the data from USA, where echinocandin resistance in C glabrata is a major public health problem.
TABLE 1

MICs of antifungal agents used against 107 Candida glabrata isolates

Antifungal agentMinimum inhibitory concentration (µg/ml)MIC50MIC90GM
0.0160.0320.060.120.250.51248163264
Fluconazole12329471248642.86
Voriconazole10610.0320.1250.032
Itraconazole52391150.1250.250.125
Micafungin103220.0160.0160.063
Anidulafungin17329220.030.060.063
Amphotericin B2891510.511

Two isolates showing intermediate phenotype for micafungin (0.125 µg/mL) and anidulafungin (0.25 µg/mL) became resistant against both antifungals after 48 incubation (G53; 0.5 µg/mL and G103; 2 µg/mL).

MICs of antifungal agents used against 107 Candida glabrata isolates Two isolates showing intermediate phenotype for micafungin (0.125 µg/mL) and anidulafungin (0.25 µg/mL) became resistant against both antifungals after 48 incubation (G53; 0.5 µg/mL and G103; 2 µg/mL). PDR1 sequencing showed that only two isolates (1.9%) were wild type; the rest harboured mutations leading to changes in the protein sequence (Figure 1, Table 2, and Table S1), most of which (87.6%, 348/397) occurred between the inhibitory and middle homology domains of Pdr1p (Figure 1). Among the changes exclusively found in FLZ‐resistant isolates, the KLTQAVN insertion between residues 226 and 227 has been previously reported, whereas mutations F439I + D554E + P927R, P695R and N768I were detected for the first time (Figure 1, Tables 2 and 3, and Table S1). One of the two isolates with the FLZ MIC = 32 µg/mL harboured a unique novel mutation (L281V) (Figure 1, Tables 2 and 3, and Table S1). Recent studies indicate that UPC2, a zinc cluster transcription factor, may contribute to FLZ resistance in C glabrata, , which may explain the high FLZ MIC for isolate G51 (32 µg/mL) without any exclusive amino acid changes in Pdr1p expected for this phenotype (Tables 2 and 3, and Table S1). Although AFST did not reveal echinocandin resistance in vitro, previously reported mutations, including S629T (in isolate G29 susceptible to both MCF and AND) and S663P (in isolates G53 and G103 intermediate for susceptibility to MCF and AND), were detected in HS1Fks1 and HS1Fks2, respectively (Table 3). As S633P has been associated with high MIC values for echinocandins, we repeated the AFST of MCF and AND for the three isolates harbouring FKS1 and FKS2 mutations and obtained consistent results, suggesting that the S663P substitution could be present in isolates not resistant to echinocandins. Interestingly, one FLZ‐resistant isolate (G103) simultaneously harboured the KLTQAVN insertion in Pdr1p and the S663P mutation in HS1‐Fks2p (Tables 2 and 3, and Table S1). None of the isolates carried mutations in HS2 regions of FKS1/2.
FIGURE 1

Mutations in the Pdr1p protein of Candida glabrata isolates. Amino acid changes observed in the isolates with high FLZ MIC values (≥32 µg/mL) are highlighted in orange colour. BD, DNA‐binding domain; MHD, middle homology domain; ID, inhibitory domain; and AD, activator domain

TABLE 2

FLZ MICs for isolates carrying Pdr1p mutations, MICs ≥ 64 µg/mL was considered to indicate FLZ resistance

Amino acid changeResistance %Fluconazole minimum inhibitory concentration (µg/mL)Total
0.51248163264
Wild type0112
S76P, V91I, L98S, T143P, 226‐Ins_KLTQAVN‐227 a 10011
S76P, V91I, L98S, T143P, P695R10011
S76P, V91I, L98S, T143P, N768I10011
S76P, V91I, L98S, T143P, F439I, D554E, E590D, P927R10011
L98S, V91I, D243N, L281V, E590D011
S76P, V91I, L98S, T143P011925146
S76P, V91I, L98S, T143P, V582A, E590D011
S76P, V91I, L98S, T143P, E590D054413
V91I, L98S, T143P, E590D0123
T143P, E590D03429
T143P01528
V91I, L98S, D243N01168
T143P, D243N, E590D011
S76P, V91I, L98S, T143P, I380L, K704N011
S76P, V91I, L98S, T143P, E590D, N791Y011
S76P, V91I, L98S, T143P, D810E, Y811N011
S76P, V91I, T143P011
S76P, V91I, L98S, T143P, S316I011
S76P, V91I, L98S, T143P, M774I, V775L011
V91I, T143P, E590D011
T143P, E590V011
T143P, D243N022
T143P, E590D, R593P011
S76P, V91I, L98S, T143P, E590V011
Total4/1071223047124107

Seven amino acids were inserted between amino acids 226‐227.

TABLE 3

Clinical characteristics of patients infected with Candida glabrata isolates showing FLZ MIC values ≥ 32 µg/mL and/or harbouring HS1‐Fks1/2 mutations

Patient #Age/sex (y)Underlying diseasesRisk factorsProphylaxis/EmpiricMAFAAFOutcomeC/GPdr1p AACFksp AACMIC (µg/mL)
FLZMCFANDAMB
G6

NA

(2006)

NANANANANADiedC5/G23P695RWT640.0160.0320.5
G29

56/M

(2017)

Chronic viral hepatitis B, diabetes mellitus, atrophic left kidneyAbdominal and liver abscesses, CVC, BSATFLZ (first dosage 800 mg/d followed by 400 mg/d for 32 d), AND (unknown dosage for 7 d) → TF and PFAmbisome (3 mg/kg for 20 d)NODiedC2/G11NSAACS629T (HS1‐Fks1)10.0160.0640.5
G51

60/M

(2019)

Pancreatic cancer and chronic gastritisCVC, BSATFLZ (first dosage 800 mg/d followed by 400 mg/d for 13 d) → TF and PFAND (200 mg/d for 4 d)NODiedC7/G28NSAACWT320.0160.0640.5
G53

63/M

(2019)

Diabetes mellitus, chronic obstructive pulmonary disease, hypertension, acute atrial fibrillationPleural puncture, PICVC, SVC, BSATMCF (100 mg/d for 3 d) → PF and TF but MCF was not changedMCF (100 mg/d for 82 d)NODiedC8/G30NSAACS663P (HS1‐Fks2)40.1250.250.5

G55

76/M

(2016)

Ovarian cancer, cardiac problems, hypertension, chronic renal failure and bacterial infectionCholecystectomy, CVC, BSATFLZ (200 mg/d for 31 d) → TF and PFAmbisome (3 mg/kg) + AND (100 mg/d) for 13 dNOSurvivedC8/G32N768IWT640.0160.0640.5
G98

13/F

(2017)

Acute myeloid leukaemiaBone marrow transplantation, CVC, BSATPosaconazole (200 mg/d, for 3 d)Caspofungin (50 mg/d for 40 d)NODiedC8/G30L281VWT320.0160.0320.5
G103

22/F

(2018)

Acute myeloid leukaemiaJVC, BSATCaspofungin (70 mg/d for 6 d) → TF and PFFLZ (200 mg d for 4 d) → TF and PFAMB (200 mg/d first dosage and continued with 3 mg/kg for 7 d) → TF and PF → AMB (3 mg/kg) + voriconazole (dosage unknown) for 7 dDiedC1/G1226‐Ins_KLTQAVN‐227S663P (HS1‐Fks2)640.1250.250.5
G107

78/M

(2019)

Acute renal failure, upper gastrointestinal bleeding, and pneumoniaFC, UC, PICVC, BSATNOFLZ (400 mg d for 3 d) → TF and PFAMB (200 mg/d for 2 d)DiedC3/G15F439I, D554E, P927RWT640.0160.0640.5

Main treatment was defined as the first‐choice antifungal therapy followed by blood culture; persistent fever was defined as TF despite antifungal therapy (prophylactic or main). Alternative antifungal treatments was provided in case of TF of the main treatment. Pdr1p mutations included only those occurring in the isolates with FLZ MIC ≥ 32 µg/mL. Risk factors do not include previous exposure to antifungals, which is mentioned separately.

Abbreviations: AA, Amino acid change; AAF, Alternative antifungal used due to therapeutic failure; AMB, Amphotericin B; AND, Anidulafungin; BSAT, Broad‐spectrum antiobiotic therapy; C/G, Cluster/Genotype; CVC, Central venous catheter; FC, Femoral catheter; FLZ, Fluconazole; JVC, Jugular venous catheter; MAF, Main antifungal; MCF, Micafungin; MIC, Minimum inhibitory concentration; NA, Not available; NSAAC, No specific amino acid change; PF, Persistent fever; PICVC, Peripherally inserted central venous catheter; SVC, Subclavian venous catheter; TF, Therapeutic failure; UC, Urine catheter; WT, Wild type.

Mutations in the Pdr1p protein of Candida glabrata isolates. Amino acid changes observed in the isolates with high FLZ MIC values (≥32 µg/mL) are highlighted in orange colour. BD, DNA‐binding domain; MHD, middle homology domain; ID, inhibitory domain; and AD, activator domain FLZ MICs for isolates carrying Pdr1p mutations, MICs ≥ 64 µg/mL was considered to indicate FLZ resistance Seven amino acids were inserted between amino acids 226‐227. Clinical characteristics of patients infected with Candida glabrata isolates showing FLZ MIC values ≥ 32 µg/mL and/or harbouring HS1Fks1/2 mutations NA (2006) 56/M (2017) 60/M (2019) 63/M (2019) G55 76/M (2016) 13/F (2017) 22/F (2018) 78/M (2019) Main treatment was defined as the first‐choice antifungal therapy followed by blood culture; persistent fever was defined as TF despite antifungal therapy (prophylactic or main). Alternative antifungal treatments was provided in case of TF of the main treatment. Pdr1p mutations included only those occurring in the isolates with FLZ MIC ≥ 32 µg/mL. Risk factors do not include previous exposure to antifungals, which is mentioned separately. Abbreviations: AA, Amino acid change; AAF, Alternative antifungal used due to therapeutic failure; AMB, Amphotericin B; AND, Anidulafungin; BSAT, Broad‐spectrum antiobiotic therapy; C/G, Cluster/Genotype; CVC, Central venous catheter; FC, Femoral catheter; FLZ, Fluconazole; JVC, Jugular venous catheter; MAF, Main antifungal; MCF, Micafungin; MIC, Minimum inhibitory concentration; NA, Not available; NSAAC, No specific amino acid change; PF, Persistent fever; PICVC, Peripherally inserted central venous catheter; SVC, Subclavian venous catheter; TF, Therapeutic failure; UC, Urine catheter; WT, Wild type. We next evaluated factors potentially associated with TF in patients infected with isolates harbouring mutation in HS1 of FKS1/FKS2 and those with FLZ MIC ≥ 32 µg/mL. Our data indicate that TF occurred in patients with isolates carrying HS1‐FKS mutations and those with FLZ MIC ≥ 32 µg/mL (n = 8; Table 3). Although S663P and S629T were not associated with echinocandin resistance in vitro, both of them corresponded to TF of MCF, AND and CSP (Table 3). This finding confirmed the notion that FKS sequencing is a more reliable approach to predict treatment outcome than phenotypic assays and that AFST alone may be misleading in the selection of appropriate antifungal therapy. However, some echinocandin‐resistant C glabrata isolates harbour mutations outside of the HS regions ; therefore, the combination of AFST and HS‐FKS sequencing may more accurately predict echinocandin TF than either techniques alone. Consistent with previous studies, , our results indicated that development of abscesses and empiric/prophylactic treatment with echinocandins were associated with mutations in HS regions and echinocandin TF. Furthermore, we found that the isolates with FLZ MIC ≥ 32 µg/mL, which is below the clinical breakpoint of 64 µg/mL recommended by CLSI and their respective mutations, could be associated with FLZ TF (Table 3). Considering that diverse mutations were detected throughout the entire Pdr1p sequence (Figure 1) and that one of the isolates with FLZ MIC = 32 µg/mL did not harbour any mutations in Pdr1p, AFST was more efficient in predicting FLZ TF compared to PDR1 sequencing. Isolate #G103, which simultaneously harboured mutations in PDR1 and FKS2, was responsible for TF with all azoles and echinocandins used. Among the eight isolates associated with TF, seven were detected in Ege (n = 4) and Gulhane (n = 3) hospitals; among these isolates, six were recovered between 2016– and 2019, including three recovered in 2019. Out of the eight patients with TF who were infected with isolates showing FLZ MIC ≥ 32 µg/mL and/or carrying FKS mutations, seven (87.5%) died (Table 3 and Appendix S1). Collectively, these data indicate the predictive potential of FLZ MIC ≥ 32 µg/mL for FLZ TF and of FKS sequencing combined with AFST data for echinocandin TF. However, it should be noted that TF cannot be exclusively attributed to microbiological characteristics of the isolates; other factors may be involved, including serum concentration of the antifungal which shows patient‐to‐patient variations, highlighting the importance of therapeutic drug monitoring to attain a favourable clinical outcome. Moreover, considering that all patients with azole/echinocandin‐resistant C glabrata isolates had a catheter inserted (except one patient infected with isolate #G6 without clinical data), it is plausible that catheter removal may have implications on clinical outcome. MMT analysis revealed 34 genotypes and 10 clusters (Figure 2, Figure S1, and Table S1). As some isolates were clonal and/or belonged to the same genotype, horizontal transfer could be suggested; however, this hypothesis requires experimental confirmation by performing whole genome sequencing and environmental screening, which are beyond the scope of our study. Nowadays, various next‐generation sequencing platforms have been increasingly employed to assess genotypic diversity as well as to identify mutations responsible for antifungal resistance, which may not be used for a particular gene but rather for numerous genes scattered throughout the genome. , , In contrast to a previous study, in our study we did not observe the phenomenon of clonal enrichment for FLZ‐resistant C glabrata isolates as evidenced by the lack of statistical association between FLZ MIC values and cluster and MMT patterns (Figure 2). Moreover, statistical analysis did not reveal any link between genotype/cluster and mortality (Appendix S1, statistical analysis section), which, however, was detected in previous studies. ,
FIGURE 2

Minimum spanning tree illustrating the lack of clonal enrichment for isolates with FLZ MIC ≥ 32 µg/mL and/or mutations in HS1 of FKS1/2. All eight isolates, except for one without clinical data (marked red), showed azole and/or echinocandin TF

Minimum spanning tree illustrating the lack of clonal enrichment for isolates with FLZ MIC ≥ 32 µg/mL and/or mutations in HS1 of FKS1/2. All eight isolates, except for one without clinical data (marked red), showed azole and/or echinocandin TF In conclusion, we performed the first analysis of clinical and microbiological characteristics of C glabrata isolates from Turkish patients with candidaemia and updated the AFST data on a multicentre scale. Although the rate of antifungal resistance in vitro was low, TF was common and mostly observed in recent years. Fks mutations and FLZ MIC ≥ 32 µg/mL were predictive of echinocandin and FLZ TF, respectively. This study was limited by its retrospective nature, which accounted for incomplete clinical data. Moreover, although it was a multicentre study, almost 50% of the isolates were from one institution (Ege University Hospital). Therefore, prospective comprehensive multicentre studies should be conducted in the future to more accurately determine the burden of antifungal resistance and its association with the clinical profile of C glabrata‐infected patients in Turkey. It should also be noted that there were no repetitive isolates, which may ultimately result in underestimation of antifungal resistance. The same is true for mutations found in PDR1, which warrants future studies that should examine the expression of efflux pumps and determine if the identified mutations directly confer azole resistance. Other potentially relevant genes such as MSH2 could be sequenced in azole/echinocandin‐resistant and susceptible isolates to clarify their role in the sensitivity of C glabrata to antifungal drugs.

CONFLICT OF INTEREST

The authors report no conflicts of interest. The authors alone are responsible for the content and writing.

AUTHOR CONTRIBUTIONS

Amir Arastehfar: Conceptualization (equal); data curation (equal); formal analysis (equal); investigation (equal); methodology (equal); project administration (equal); supervision (equal); validation (equal); visualization (equal); writing‐original draft (equal); writing‐review and editing (equal). Farnaz Daneshnia: Data curation (equal); investigation (equal); methodology (equal); project administration (equal); supervision (equal); validation (equal); writing‐review and editing (equal). Mohamad Salehi: Data curation (equal); formal analysis (equal); investigation (equal); resources (equal); writing‐review and editing (equal). Melike Yaşar: Data curation (equal); investigation (equal); resources (equal); writing‐review and editing (equal). Tuğrul Hoşbul: Data curation (equal); investigation (equal); writing‐review and editing (equal). Macit Ilkit: Conceptualization (equal); data curation (equal); investigation (equal); project administration (equal); resources (equal); supervision (equal); validation (equal); writing‐review and editing (equal). Weihua Pan: Conceptualization (equal); funding acquisition (equal); investigation (equal); methodology (equal); project administration (equal); supervision (equal); validation (equal); writing‐review and editing (equal). Ferry Hagen: Formal analysis (equal); visualization (equal); writing‐review and editing (equal). Nazlı Arslan: Data curation (equal); resources (equal); writing‐review and editing (equal). Hatice Türk‐Dağı: Data curation (equal); resources (equal); writing‐review and editing (equal). Süleyha Hilmioglu‐Polat: Conceptualization (equal); data curation (equal); investigation (equal); methodology (equal); project administration (equal); resources (equal); supervision (equal); validation (equal); writing‐review and editing (equal). David S. Perlin: Conceptualization (equal); funding acquisition (equal); methodology (equal); project administration (equal); supervision (equal); writing‐review and editing (equal). Cornelia Lass‐Floerl: Conceptualization (equal); data curation (equal); investigation (equal); methodology (equal); project administration (equal); resources (equal); supervision (equal); validation (equal); writing‐review and editing (equal). Supplementary Material Click here for additional data file.
  59 in total

1.  Interlaboratory variability of Caspofungin MICs for Candida spp. Using CLSI and EUCAST methods: should the clinical laboratory be testing this agent?

Authors:  A Espinel-Ingroff; M C Arendrup; M A Pfaller; L X Bonfietti; B Bustamante; E Canton; E Chryssanthou; M Cuenca-Estrella; E Dannaoui; A Fothergill; J Fuller; P Gaustad; G M Gonzalez; J Guarro; C Lass-Flörl; S R Lockhart; J F Meis; C B Moore; L Ostrosky-Zeichner; T Pelaez; S R B S Pukinskas; G St-Germain; M W Szeszs; J Turnidge
Journal:  Antimicrob Agents Chemother       Date:  2013-09-09       Impact factor: 5.191

2.  Changing epidemiology of candidaemia in Australia.

Authors:  Belinda Chapman; Monica Slavin; Debbie Marriott; Catriona Halliday; Sarah Kidd; Ian Arthur; Narin Bak; Christopher H Heath; Karina Kennedy; C Orla Morrissey; Tania C Sorrell; Sebastian van Hal; Caitlin Keighley; Emma Goeman; Neil Underwood; Krispin Hajkowicz; Ann Hofmeyr; Michael Leung; Nenad Macesic; Jeannie Botes; Christopher Blyth; Louise Cooley; C Robert George; Pankaja Kalukottege; Alison Kesson; Brendan McMullan; Robert Baird; Jennifer Robson; Tony M Korman; Stella Pendle; Kerry Weeks; Eunice Liu; Elaine Cheong; Sharon Chen
Journal:  J Antimicrob Chemother       Date:  2017-04-01       Impact factor: 5.790

3.  Correlation between broth microdilution and disk diffusion methods for antifungal susceptibility testing of caspofungin, voriconazole, amphotericin B, itraconazole and fluconazole against Candida glabrata.

Authors:  N Kiraz; I Dag; Y Oz; M Yamac; A Kiremitci; N Kasifoglu
Journal:  J Microbiol Methods       Date:  2010-05-21       Impact factor: 2.363

4.  Comparison of costs, length of stay, and mortality associated with Candida glabrata and Candida albicans bloodstream infections.

Authors:  Cassandra Moran; Chelsea A Grussemeyer; James R Spalding; Daniel K Benjamin; Shelby D Reed
Journal:  Am J Infect Control       Date:  2010-02       Impact factor: 2.918

5.  Echinocandin resistance and population structure of invasive Candida glabrata isolates from two university hospitals in Germany and Austria.

Authors:  Ulrike Klotz; Dirk Schmidt; Birgit Willinger; Eike Steinmann; Jan Buer; Peter-Michael Rath; Joerg Steinmann
Journal:  Mycoses       Date:  2016-01-25       Impact factor: 4.377

6.  Molecular Epidemiology and Antifungal Susceptibility of Candida glabrata in China (August 2009 to July 2014): A Multi-Center Study.

Authors:  Xin Hou; Meng Xiao; Sharon C-A Chen; Fanrong Kong; He Wang; Yun-Zhuo Chu; Mei Kang; Zi-Yong Sun; Zhi-Dong Hu; Ruo-Yu Li; Juan Lu; Kang Liao; Tie-Shi Hu; Yu-Xing Ni; Gui-Ling Zou; Ge Zhang; Xin Fan; Yu-Pei Zhao; Ying-Chun Xu
Journal:  Front Microbiol       Date:  2017-05-23       Impact factor: 5.640

7.  A multi-centric Study of Candida bloodstream infection in Lima-Callao, Peru: Species distribution, antifungal resistance and clinical outcomes.

Authors:  Lourdes Rodriguez; Beatriz Bustamante; Luz Huaroto; Cecilia Agurto; Ricardo Illescas; Rafael Ramirez; Alberto Diaz; Jose Hidalgo
Journal:  PLoS One       Date:  2017-04-18       Impact factor: 3.240

8.  Secular trend in candidemia and the use of fluconazole in Finland, 2004-2007.

Authors:  Eira Poikonen; Outi Lyytikäinen; Veli-Jukka Anttila; Irma Koivula; Jukka Lumio; Pirkko Kotilainen; Hannu Syrjälä; Petri Ruutu
Journal:  BMC Infect Dis       Date:  2010-10-28       Impact factor: 3.090

9.  The Gastrointestinal Tract Is a Major Source of Echinocandin Drug Resistance in a Murine Model of Candida glabrata Colonization and Systemic Dissemination.

Authors:  Kelley R Healey; Yoji Nagasaki; Matthew Zimmerman; Milena Kordalewska; Steven Park; Yanan Zhao; David S Perlin
Journal:  Antimicrob Agents Chemother       Date:  2017-11-22       Impact factor: 5.191

10.  Antifungal resistance in patients with Candidaemia: a retrospective cohort study.

Authors:  Namareq F Aldardeer; Hadiel Albar; Majda Al-Attas; Abdelmoneim Eldali; Mohammed Qutub; Ashraf Hassanien; Basem Alraddadi
Journal:  BMC Infect Dis       Date:  2020-01-17       Impact factor: 3.090

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  12 in total

1.  Invasive candidiasis: investigational drugs in the clinical development pipeline and mechanisms of action.

Authors:  Martin Hoenigl; Rosanne Sprute; Amir Arastehfar; John R Perfect; Cornelia Lass-Flörl; Romuald Bellmann; Juergen Prattes; George R Thompson; Nathan P Wiederhold; Mohanad M Al Obaidi; Birgit Willinger; Maiken C Arendrup; Philipp Koehler; Matteo Oliverio; Matthias Egger; Ilan S Schwartz; Oliver A Cornely; Peter G Pappas; Robert Krause
Journal:  Expert Opin Investig Drugs       Date:  2022-06-15       Impact factor: 6.498

2.  Evaluation of Molecular Epidemiology, Clinical Characteristics, Antifungal Susceptibility Profiles, and Molecular Mechanisms of Antifungal Resistance of Iranian Candida parapsilosis Species Complex Blood Isolates.

Authors:  Amir Arastehfar; Farnaz Daneshnia; Mohammad Javad Najafzadeh; Ferry Hagen; Shahram Mahmoudi; Mohammadreza Salehi; Hossein Zarrinfar; Zahra Namvar; Zahra Zareshahrabadi; Sadegh Khodavaisy; Kamiar Zomorodian; Weihua Pan; Bart Theelen; Markus Kostrzewa; Teun Boekhout; Cornelia Lass-Flörl
Journal:  Front Cell Infect Microbiol       Date:  2020-05-21       Impact factor: 5.293

Review 3.  Drug-Resistant Fungi: An Emerging Challenge Threatening Our Limited Antifungal Armamentarium.

Authors:  Amir Arastehfar; Toni Gabaldón; Rocio Garcia-Rubio; Jeffrey D Jenks; Martin Hoenigl; Helmut J F Salzer; Macit Ilkit; Cornelia Lass-Flörl; David S Perlin
Journal:  Antibiotics (Basel)       Date:  2020-12-08

4.  Efficacy of LAMB against Emerging Azole- and Multidrug-Resistant Candida parapsilosis Isolates in the Galleria mellonella Model.

Authors:  Ulrike Binder; Amir Arastehfar; Lisa Schnegg; Caroline Hörtnagl; Suleyha Hilmioğlu-Polat; David S Perlin; Cornelia Lass-Flörl
Journal:  J Fungi (Basel)       Date:  2020-12-18

5.  Clonal Candidemia Outbreak by Candida parapsilosis Carrying Y132F in Turkey: Evolution of a Persisting Challenge.

Authors:  Amir Arastehfar; Suleyha Hilmioğlu-Polat; Farnaz Daneshnia; Weihua Pan; Ahmed Hafez; Wenjie Fang; Wanqing Liao; Zümrüt Şahbudak-Bal; Dilek Yeşim Metin; João N de Almeida Júnior; Macit Ilkit; David S Perlin; Cornelia Lass-Flörl
Journal:  Front Cell Infect Microbiol       Date:  2021-04-22       Impact factor: 5.293

6.  Emergence of resistant Candida glabrata in Germany.

Authors:  Alexander Maximilian Aldejohann; Michaela Herz; Ronny Martin; Grit Walther; Oliver Kurzai
Journal:  JAC Antimicrob Resist       Date:  2021-08-07

7.  Case Report: Echinocandin-Resistance Candida glabrata FKS Mutants From Patient Following Radical Cystoprostatectomy Due to Muscle-Invasive Bladder Cancer.

Authors:  Maria Szymankiewicz; Krzysztof Kamecki; Sylwia Jarzynka; Anna Koryszewska-Bagińska; Gabriela Olędzka; Tomasz Nowikiewicz
Journal:  Front Oncol       Date:  2021-12-15       Impact factor: 6.244

Review 8.  The Antifungal Pipeline: Fosmanogepix, Ibrexafungerp, Olorofim, Opelconazole, and Rezafungin.

Authors:  Martin Hoenigl; Rosanne Sprute; Matthias Egger; Amir Arastehfar; Oliver A Cornely; Robert Krause; Cornelia Lass-Flörl; Juergen Prattes; Andrej Spec; George R Thompson; Nathan Wiederhold; Jeffrey D Jenks
Journal:  Drugs       Date:  2021-10-09       Impact factor: 9.546

9.  Low level of antifungal resistance of Candida glabrata blood isolates in Turkey: Fluconazole minimum inhibitory concentration and FKS mutations can predict therapeutic failure.

Authors:  Amir Arastehfar; Farnaz Daneshnia; Mohammadreza Salehi; Melike Yaşar; Tuğrul Hoşbul; Macit Ilkit; Weihua Pan; Ferry Hagen; Nazlı Arslan; Hatice Türk-Dağı; Süleyha Hilmioğlu-Polat; David S Perlin; Cornelia Lass-Flörl
Journal:  Mycoses       Date:  2020-08-05       Impact factor: 4.377

Review 10.  Antifungal Resistance in Clinical Isolates of Candida glabrata in Ibero-America.

Authors:  Erick Martínez-Herrera; María Guadalupe Frías-De-León; Rigoberto Hernández-Castro; Eduardo García-Salazar; Roberto Arenas; Esther Ocharan-Hernández; Carmen Rodríguez-Cerdeira
Journal:  J Fungi (Basel)       Date:  2021-12-26
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