Literature DB >> 32409295

Genome-Wide Association Studies of CKD and Related Traits.

Adrienne Tin1,2, Anna Köttgen3,4.   

Abstract

The past few years have seen major advances in genome-wide association studies (GWAS) of CKD and kidney function-related traits in several areas: increases in sample size from >100,000 to >1 million, enabling the discovery of >250 associated genetic loci that are highly reproducible; the inclusion of participants not only of European but also of non-European ancestries; and the use of advanced computational methods to integrate additional genomic and other unbiased, high-dimensional data to characterize the underlying genetic architecture and prioritize potentially causal genes and variants. Together with other large-scale biobank and genetic association studies of complex traits, these GWAS of kidney function-related traits have also provided novel insight into the relationship of kidney function to other diseases with respect to their genetic associations, genetic correlation, and directional relationships. A number of studies also included functional experiments using model organisms or cell lines to validate prioritized potentially causal genes and/or variants. In this review article, we will summarize these recent GWAS of CKD and kidney function-related traits, explain approaches for downstream characterization of associated genetic loci and the value of such computational follow-up analyses, and discuss related challenges along with potential solutions to ultimately enable improved treatment and prevention of kidney diseases through genetics.
Copyright © 2020 by the American Society of Nephrology.

Entities:  

Keywords:  Biological Specimen Banks; Cell Line; Chronic; Follow-Up Studies; Genetic Association Studies; Genetic Loci; Genome; Genome-Wide Association Study; Genomics; Kidney Genomics Series; Multifactorial Inheritance; Renal Insufficiency; Sample Size; chronic kidney disease; genetic renal disease

Year:  2020        PMID: 32409295      PMCID: PMC7646230          DOI: 10.2215/CJN.00020120

Source DB:  PubMed          Journal:  Clin J Am Soc Nephrol        ISSN: 1555-9041            Impact factor:   8.237


  56 in total

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Journal:  Genet Epidemiol       Date:  2011-05-18       Impact factor: 2.135

3.  Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.

Authors:  Horia C Stanescu; Mauricio Arcos-Burgos; Alan Medlar; Detlef Bockenhauer; Anna Kottgen; Liviu Dragomirescu; Catalin Voinescu; Naina Patel; Kerra Pearce; Mike Hubank; Henry A F Stephens; Valerie Laundy; Sandosh Padmanabhan; Anna Zawadzka; Julia M Hofstra; Marieke J H Coenen; Martin den Heijer; Lambertus A L M Kiemeney; Delphine Bacq-Daian; Benedicte Stengel; Stephen H Powis; Paul Brenchley; John Feehally; Andrew J Rees; Hanna Debiec; Jack F M Wetzels; Pierre Ronco; Peter W Mathieson; Robert Kleta
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6.  New loci associated with kidney function and chronic kidney disease.

Authors:  Anna Köttgen; Cristian Pattaro; Carsten A Böger; Christian Fuchsberger; Matthias Olden; Nicole L Glazer; Afshin Parsa; Xiaoyi Gao; Qiong Yang; Albert V Smith; Jeffrey R O'Connell; Man Li; Helena Schmidt; Toshiko Tanaka; Aaron Isaacs; Shamika Ketkar; Shih-Jen Hwang; Andrew D Johnson; Abbas Dehghan; Alexander Teumer; Guillaume Paré; Elizabeth J Atkinson; Tanja Zeller; Kurt Lohman; Marilyn C Cornelis; Nicole M Probst-Hensch; Florian Kronenberg; Anke Tönjes; Caroline Hayward; Thor Aspelund; Gudny Eiriksdottir; Lenore J Launer; Tamara B Harris; Evadnie Rampersaud; Braxton D Mitchell; Dan E Arking; Eric Boerwinkle; Maksim Struchalin; Margherita Cavalieri; Andrew Singleton; Francesco Giallauria; Jeffrey Metter; Ian H de Boer; Talin Haritunians; Thomas Lumley; David Siscovick; Bruce M Psaty; M Carola Zillikens; Ben A Oostra; Mary Feitosa; Michael Province; Mariza de Andrade; Stephen T Turner; Arne Schillert; Andreas Ziegler; Philipp S Wild; Renate B Schnabel; Sandra Wilde; Thomas F Munzel; Tennille S Leak; Thomas Illig; Norman Klopp; Christa Meisinger; H-Erich Wichmann; Wolfgang Koenig; Lina Zgaga; Tatijana Zemunik; Ivana Kolcic; Cosetta Minelli; Frank B Hu; Asa Johansson; Wilmar Igl; Ghazal Zaboli; Sarah H Wild; Alan F Wright; Harry Campbell; David Ellinghaus; Stefan Schreiber; Yurii S Aulchenko; Janine F Felix; Fernando Rivadeneira; Andre G Uitterlinden; Albert Hofman; Medea Imboden; Dorothea Nitsch; Anita Brandstätter; Barbara Kollerits; Lyudmyla Kedenko; Reedik Mägi; Michael Stumvoll; Peter Kovacs; Mladen Boban; Susan Campbell; Karlhans Endlich; Henry Völzke; Heyo K Kroemer; Matthias Nauck; Uwe Völker; Ozren Polasek; Veronique Vitart; Sunita Badola; Alexander N Parker; Paul M Ridker; Sharon L R Kardia; Stefan Blankenberg; Yongmei Liu; Gary C Curhan; Andre Franke; Thierry Rochat; Bernhard Paulweber; Inga Prokopenko; Wei Wang; Vilmundur Gudnason; Alan R Shuldiner; Josef Coresh; Reinhold Schmidt; Luigi Ferrucci; Michael G Shlipak; Cornelia M van Duijn; Ingrid Borecki; Bernhard K Krämer; Igor Rudan; Ulf Gyllensten; James F Wilson; Jacqueline C Witteman; Peter P Pramstaller; Rainer Rettig; Nick Hastie; Daniel I Chasman; W H Kao; Iris M Heid; Caroline S Fox
Journal:  Nat Genet       Date:  2010-04-11       Impact factor: 38.330

7.  Causal Effects of Genetically Predicted Cardiovascular Risk Factors on Chronic Kidney Disease: A Two-Sample Mendelian Randomization Study.

Authors:  Hui-Min Liu; Qin Hu; Qiang Zhang; Guan-Yue Su; Hong-Mei Xiao; Bo-Yang Li; Wen-Di Shen; Xiang Qiu; Wan-Qiang Lv; Hong-Wen Deng
Journal:  Front Genet       Date:  2019-05-03       Impact factor: 4.599

8.  Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.

Authors:  Mary E Haas; Krishna G Aragam; Connor A Emdin; Alexander G Bick; Gibran Hemani; George Davey Smith; Sekar Kathiresan
Journal:  Am J Hum Genet       Date:  2018-09-13       Impact factor: 11.025

9.  Bayesian test for colocalisation between pairs of genetic association studies using summary statistics.

Authors:  Claudia Giambartolomei; Damjan Vukcevic; Eric E Schadt; Lude Franke; Aroon D Hingorani; Chris Wallace; Vincent Plagnol
Journal:  PLoS Genet       Date:  2014-05-15       Impact factor: 5.917

10.  Genome-wide polygenic scores for common diseases identify individuals with risk equivalent to monogenic mutations.

Authors:  Amit V Khera; Mark Chaffin; Krishna G Aragam; Mary E Haas; Carolina Roselli; Seung Hoan Choi; Pradeep Natarajan; Eric S Lander; Steven A Lubitz; Patrick T Ellinor; Sekar Kathiresan
Journal:  Nat Genet       Date:  2018-08-13       Impact factor: 38.330

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3.  An intermediate-effect size variant in UMOD confers risk for chronic kidney disease.

Authors:  Eric Olinger; Céline Schaeffer; Kendrah Kidd; Elhussein A E Elhassan; Yurong Cheng; Inès Dufour; Guglielmo Schiano; Holly Mabillard; Elena Pasqualetto; Patrick Hofmann; Daniel G Fuster; Andreas D Kistler; Ian J Wilson; Stanislav Kmoch; Laure Raymond; Thomas Robert; Kai-Uwe Eckardt; Anthony J Bleyer; Anna Köttgen; Peter J Conlon; Michael Wiesener; John A Sayer; Luca Rampoldi; Olivier Devuyst
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Review 4.  Genetic kidney diseases as an underrecognized cause of chronic kidney disease: the key role of international registry reports.

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5.  Metabolite Genome-Wide Association Study for Indoleamine 2,3-Dioxygenase Activity Associated with Chronic Kidney Disease.

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Review 6.  The Dynamics and Plasticity of Epigenetics in Diabetic Kidney Disease: Therapeutic Applications Vis-à-Vis.

Authors:  Feng-Chih Kuo; Chia-Ter Chao; Shih-Hua Lin
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Review 7.  Precision medicine approaches for diabetic kidney disease: opportunities and challenges.

Authors:  Sok Cin Tye; Petra Denig; Hiddo J L Heerspink
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  7 in total

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