Literature DB >> 32405275

Dilated Convolutional Neural Networks for Sequential Manifold-valued Data.

Xingjian Zhen1, Rudrasis Chakraborty2, Nicholas Vogt1, Barbara B Bendlin1, Vikas Singh1.   

Abstract

Efforts are underway to study ways via which the power of deep neural networks can be extended to non-standard data types such as structured data (e.g., graphs) or manifold-valued data (e.g., unit vectors or special matrices). Often, sizable empirical improvements are possible when the geometry of such data spaces are incorporated into the design of the model, architecture, and the algorithms. Motivated by neuroimaging applications, we study formulations where the data are sequential manifold-valued measurements. This case is common in brain imaging, where the samples correspond to symmetric positive definite matrices or orientation distribution functions. Instead of a recurrent model which poses computational/technical issues, and inspired by recent results showing the viability of dilated convolutional models for sequence prediction, we develop a dilated convolutional neural network architecture for this task. On the technical side, we show how the modules needed in our network can be derived while explicitly taking the Riemannian manifold structure into account. We show how the operations needed can leverage known results for calculating the weighted Fréchet Mean (wFM). Finally, we present scientific results for group difference analysis in Alzheimer's disease (AD) where the groups are derived using AD pathology load: here the model finds several brain fiber bundles that are related to AD even when the subjects are all still cognitively healthy.

Entities:  

Year:  2020        PMID: 32405275      PMCID: PMC7220031          DOI: 10.1109/iccv.2019.01072

Source DB:  PubMed          Journal:  Proc IEEE Int Conf Comput Vis        ISSN: 1550-5499


  21 in total

1.  On the use of generalized additive models in time-series studies of air pollution and health.

Authors:  Francesca Dominici; Aidan McDermott; Scott L Zeger; Jonathan M Samet
Journal:  Am J Epidemiol       Date:  2002-08-01       Impact factor: 4.897

2.  DTI segmentation by statistical surface evolution.

Authors:  Christophe Lenglet; Mikaël Rousson; Rachid Deriche
Journal:  IEEE Trans Med Imaging       Date:  2006-06       Impact factor: 10.048

3.  Tensor-based morphometry as a neuroimaging biomarker for Alzheimer's disease: an MRI study of 676 AD, MCI, and normal subjects.

Authors:  Xue Hua; Alex D Leow; Neelroop Parikshak; Suh Lee; Ming-Chang Chiang; Arthur W Toga; Clifford R Jack; Michael W Weiner; Paul M Thompson
Journal:  Neuroimage       Date:  2008-07-22       Impact factor: 6.556

4.  Long short-term memory.

Authors:  S Hochreiter; J Schmidhuber
Journal:  Neural Comput       Date:  1997-11-15       Impact factor: 2.026

5.  ODF RECONSTRUCTION IN Q-BALL IMAGING WITH SOLID ANGLE CONSIDERATION.

Authors:  Iman Aganj; Christophe Lenglet; Guillermo Sapiro
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009 Jun-Jul

6.  Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging.

Authors:  Hyunwoo J Kim; Nagesh Adluru; Heemanshu Suri; Baba C Vemuri; Sterling C Johnson; Vikas Singh
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2017-11-09

7.  Dissecting phenotypic traits linked to human resilience to Alzheimer's pathology.

Authors:  Beatriz G Perez-Nievas; Thor D Stein; Hwan-Ching Tai; Oriol Dols-Icardo; Thomas C Scotton; Isabel Barroeta-Espar; Leticia Fernandez-Carballo; Estibaliz Lopez de Munain; Jesus Perez; Marta Marquie; Alberto Serrano-Pozo; Mathew P Frosch; Val Lowe; Joseph E Parisi; Ronald C Petersen; Milos D Ikonomovic; Oscar L López; William Klunk; Bradley T Hyman; Teresa Gómez-Isla
Journal:  Brain       Date:  2013-07-03       Impact factor: 13.501

8.  Post-mortem correlates of in vivo PiB-PET amyloid imaging in a typical case of Alzheimer's disease.

Authors:  Milos D Ikonomovic; William E Klunk; Eric E Abrahamson; Chester A Mathis; Julie C Price; Nicholas D Tsopelas; Brian J Lopresti; Scott Ziolko; Wenzhu Bi; William R Paljug; Manik L Debnath; Caroline E Hope; Barbara A Isanski; Ronald L Hamilton; Steven T DeKosky
Journal:  Brain       Date:  2008-03-12       Impact factor: 13.501

9.  Dipy, a library for the analysis of diffusion MRI data.

Authors:  Eleftherios Garyfallidis; Matthew Brett; Bagrat Amirbekian; Ariel Rokem; Stefan van der Walt; Maxime Descoteaux; Ian Nimmo-Smith
Journal:  Front Neuroinform       Date:  2014-02-21       Impact factor: 4.081

Review 10.  NIA-AA Research Framework: Toward a biological definition of Alzheimer's disease.

Authors:  Clifford R Jack; David A Bennett; Kaj Blennow; Maria C Carrillo; Billy Dunn; Samantha Budd Haeberlein; David M Holtzman; William Jagust; Frank Jessen; Jason Karlawish; Enchi Liu; Jose Luis Molinuevo; Thomas Montine; Creighton Phelps; Katherine P Rankin; Christopher C Rowe; Philip Scheltens; Eric Siemers; Heather M Snyder; Reisa Sperling
Journal:  Alzheimers Dement       Date:  2018-04       Impact factor: 21.566

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  2 in total

1.  Scaling Recurrent Models via Orthogonal Approximations in Tensor Trains.

Authors:  Ronak Mehta; Rudrasis Chakraborty; Yunyang Xiong; Vikas Singh
Journal:  Proc IEEE Int Conf Comput Vis       Date:  2019 Oct-Nov

2.  Flow-based Generative Models for Learning Manifold to Manifold Mappings.

Authors:  Xingjian Zhen; Rudrasis Chakraborty; Liu Yang; Vikas Singh
Journal:  Proc Conf AAAI Artif Intell       Date:  2021-05-18
  2 in total

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