Literature DB >> 32405272

A HYBRID METHOD FOR STIFF REACTION-DIFFUSION EQUATIONS.

Yuchi Qiu1, Weitao Chen2, Qing Nie3.   

Abstract

The second-order implicit integration factor method (IIF2) is effective at solving stiff reaction-diffusion equations owing to its nice stability condition. IIF has previously been applied primarily to systems in which the reaction contained no explicitly time-dependent terms and the boundary conditions were homogeneous. If applied to a system with explicitly time-dependent reaction terms, we find that IIF2 requires prohibitively small time-steps, that are relative to the square of spatial grid sizes, to attain its theoretical second-order temporal accuracy. Although the second-order implicit exponential time differencing (iETD2) method can accurately handle explicitly time-dependent reactions, it is more computationally expensive than IIF2. In this paper, we develop a hybrid approach that combines the advantages of both methods, applying IIF2 to reaction terms that are not explicitly time-dependent and applying iETD2 to those which are. The second-order hybrid IIF-ETD method (hIFE2) inherits the lower complexity of IIF2 and the ability to remain second-order accurate in time for large time-steps from iETD2. Also, it inherits the unconditional stability from IIF2 and iETD2 methods for dealing with the stiffness in reaction-diffusion systems. Through a transformation, hIFE2 can handle nonhomogeneous boundary conditions accurately and efficiently. In addition, this approach can be naturally combined with the compact and array representations of IIF and ETD for systems in higher spatial dimensions. Various numerical simulations containing linear and nonlinear reactions are presented to demonstrate the superior stability, accuracy, and efficiency of the new hIFE method.

Entities:  

Keywords:  Implicit integration factor methods; explicitly time-dependent reaction; exponential time differencing methods; nonhomogeneous boundary conditions; reaction–diffusion equations

Year:  2019        PMID: 32405272      PMCID: PMC7220146          DOI: 10.3934/dcdsb.2019144

Source DB:  PubMed          Journal:  Discrete Continuous Dyn Syst Ser B        ISSN: 1531-3492            Impact factor:   1.327


  17 in total

1.  Do morphogen gradients arise by diffusion?

Authors:  Arthur D Lander; Qing Nie; Frederic Y M Wan
Journal:  Dev Cell       Date:  2002-06       Impact factor: 12.270

2.  Kinetics of morphogen gradient formation.

Authors:  Anna Kicheva; Periklis Pantazis; Tobias Bollenbach; Yannis Kalaidzidis; Thomas Bittig; Frank Jülicher; Marcos González-Gaitán
Journal:  Science       Date:  2007-01-26       Impact factor: 47.728

3.  Finite-difference schemes for reaction-diffusion equations modeling predator-prey interactions in MATLAB.

Authors:  Marcus R Garvie
Journal:  Bull Math Biol       Date:  2007-02-01       Impact factor: 1.758

Review 4.  Morphogen gradient formation.

Authors:  Ortrud Wartlick; Anna Kicheva; Marcos González-Gaitán
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-09       Impact factor: 10.005

5.  The chemical basis of morphogenesis. 1953.

Authors:  A M Turing
Journal:  Bull Math Biol       Date:  1990       Impact factor: 1.758

6.  An Integration Factor Method for Stochastic and Stiff Reaction-Diffusion Systems.

Authors:  Catherine Ta; Dongyong Wang; Qing Nie
Journal:  J Comput Phys       Date:  2015-08-15       Impact factor: 3.553

7.  Semi-implicit Integration Factor Methods on Sparse Grids for High-Dimensional Systems.

Authors:  Dongyong Wang; Weitao Chen; Qing Nie
Journal:  J Comput Phys       Date:  2015-07-01       Impact factor: 3.553

8.  Array-representation Integration Factor Method for High-dimensional Systems.

Authors:  Dongyong Wang; Lei Zhang; Qing Nie
Journal:  J Comput Phys       Date:  2014-02-01       Impact factor: 3.553

9.  A theory of biological pattern formation.

Authors:  A Gierer; H Meinhardt
Journal:  Kybernetik       Date:  1972-12

10.  Robustness of the BMP morphogen gradient in Drosophila embryonic patterning.

Authors:  Avigdor Eldar; Ruslan Dorfman; Daniel Weiss; Hilary Ashe; Ben-Zion Shilo; Naama Barkai
Journal:  Nature       Date:  2002-09-19       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.