Literature DB >> 32398937

Deriving pairwise transfer entropy from network structure and motifs.

Leonardo Novelli1, Fatihcan M Atay2,3, Jürgen Jost3,4, Joseph T Lizier1,3.   

Abstract

Transfer entropy (TE) is an established method for quantifying directed statistical dependencies in neuroimaging and complex systems datasets. The pairwise (or bivariate) TE from a source to a target node in a network does not depend solely on the local source-target link weight, but on the wider network structure that the link is embedded in. This relationship is studied using a discrete-time linearly coupled Gaussian model, which allows us to derive the TE for each link from the network topology. It is shown analytically that the dependence on the directed link weight is only a first approximation, valid for weak coupling. More generally, the TE increases with the in-degree of the source and decreases with the in-degree of the target, indicating an asymmetry of information transfer between hubs and low-degree nodes. In addition, the TE is directly proportional to weighted motif counts involving common parents or multiple walks from the source to the target, which are more abundant in networks with a high clustering coefficient than in random networks. Our findings also apply to Granger causality, which is equivalent to TE for Gaussian variables. Moreover, similar empirical results on random Boolean networks suggest that the dependence of the TE on the in-degree extends to nonlinear dynamics.
© 2020 The Author(s).

Keywords:  connectome; information theory; motifs; network inference; transfer entropy

Year:  2020        PMID: 32398937      PMCID: PMC7209155          DOI: 10.1098/rspa.2019.0779

Source DB:  PubMed          Journal:  Proc Math Phys Eng Sci        ISSN: 1364-5021            Impact factor:   2.704


  44 in total

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2.  Network structure of cerebral cortex shapes functional connectivity on multiple time scales.

Authors:  Christopher J Honey; Rolf Kötter; Michael Breakspear; Olaf Sporns
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-04       Impact factor: 11.205

3.  Local information transfer as a spatiotemporal filter for complex systems.

Authors:  Joseph T Lizier; Mikhail Prokopenko; Albert Y Zomaya
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-02-15

4.  Collective dynamics of 'small-world' networks.

Authors:  D J Watts; S H Strogatz
Journal:  Nature       Date:  1998-06-04       Impact factor: 49.962

5.  Information dynamics in small-world Boolean networks.

Authors:  Joseph T Lizier; Siddharth Pritam; Mikhail Prokopenko
Journal:  Artif Life       Date:  2011-07-15       Impact factor: 0.667

6.  Information-based detection of nonlinear Granger causality in multivariate processes via a nonuniform embedding technique.

Authors:  Luca Faes; Giandomenico Nollo; Alberto Porta
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-05-11

7.  Information storage, loop motifs, and clustered structure in complex networks.

Authors:  Joseph T Lizier; Fatihcan M Atay; Jürgen Jost
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-08-15

8.  A measure for brain complexity: relating functional segregation and integration in the nervous system.

Authors:  G Tononi; O Sporns; G M Edelman
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-24       Impact factor: 11.205

9.  How structure sculpts function: Unveiling the contribution of anatomical connectivity to the brain's spontaneous correlation structure.

Authors:  R G Bettinardi; G Deco; V M Karlaftis; T J Van Hartevelt; H M Fernandes; Z Kourtzi; M L Kringelbach; G Zamora-López
Journal:  Chaos       Date:  2017-04       Impact factor: 3.642

10.  Large-scale directed network inference with multivariate transfer entropy and hierarchical statistical testing.

Authors:  Leonardo Novelli; Patricia Wollstadt; Pedro Mediano; Michael Wibral; Joseph T Lizier
Journal:  Netw Neurosci       Date:  2019-07-01
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1.  Early lock-in of structured and specialised information flows during neural development.

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Journal:  Elife       Date:  2022-03-14       Impact factor: 8.713

2.  Inferring network properties from time series using transfer entropy and mutual information: Validation of multivariate versus bivariate approaches.

Authors:  Leonardo Novelli; Joseph T Lizier
Journal:  Netw Neurosci       Date:  2021-04-27
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