Literature DB >> 21728495

Information-based detection of nonlinear Granger causality in multivariate processes via a nonuniform embedding technique.

Luca Faes1, Giandomenico Nollo, Alberto Porta.   

Abstract

We present an approach, framed in information theory, to assess nonlinear causality between the subsystems of a whole stochastic or deterministic dynamical system. The approach follows a sequential procedure for nonuniform embedding of multivariate time series, whereby embedding vectors are built progressively on the basis of a minimization criterion applied to the entropy of the present state of the system conditioned to its past states. A corrected conditional entropy estimator compensating for the biasing effect of single points in the quantized hyperspace is used to guarantee the existence of a minimum entropy rate at which to terminate the procedure. The causal coupling is detected according to the Granger notion of predictability improvement, and is quantified in terms of information transfer. We apply the approach to simulations of deterministic and stochastic systems, showing its superiority over standard uniform embedding. Effects of quantization, data length, and noise contamination are investigated. As practical applications, we consider the assessment of cardiovascular regulatory mechanisms from the analysis of heart period, arterial pressure, and respiration time series, and the investigation of the information flow across brain areas from multichannel scalp electroencephalographic recordings.

Entities:  

Mesh:

Year:  2011        PMID: 21728495     DOI: 10.1103/PhysRevE.83.051112

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  45 in total

1.  Transductive Feature Selection Using Clustering-Based Sample Entropy for Temperature Prediction in Weather Forecasting.

Authors:  Zahra Karevan; Johan A K Suykens
Journal:  Entropy (Basel)       Date:  2018-04-10       Impact factor: 2.524

2.  Conditional Self-Entropy and Conditional Joint Transfer Entropy in Heart Period Variability during Graded Postural Challenge.

Authors:  Alberto Porta; Luca Faes; Giandomenico Nollo; Vlasta Bari; Andrea Marchi; Beatrice De Maria; Anielle C M Takahashi; Aparecida M Catai
Journal:  PLoS One       Date:  2015-07-15       Impact factor: 3.240

3.  Entropy measures, entropy estimators, and their performance in quantifying complex dynamics: Effects of artifacts, nonstationarity, and long-range correlations.

Authors:  Wanting Xiong; Luca Faes; Plamen Ch Ivanov
Journal:  Phys Rev E       Date:  2017-06-12       Impact factor: 2.529

4.  Measuring spectrally-resolved information transfer.

Authors:  Edoardo Pinzuti; Patricia Wollstadt; Aaron Gutknecht; Oliver Tüscher; Michael Wibral
Journal:  PLoS Comput Biol       Date:  2020-12-28       Impact factor: 4.475

5.  Recovering directed networks in neuroimaging datasets using partially conditioned Granger causality.

Authors:  Guo-Rong Wu; Wei Liao; Sebastiano Stramaglia; Huafu Chen; Daniele Marinazzo
Journal:  Brain Connect       Date:  2013-05-15

6.  A Graph Algorithmic Approach to Separate Direct from Indirect Neural Interactions.

Authors:  Patricia Wollstadt; Ulrich Meyer; Michael Wibral
Journal:  PLoS One       Date:  2015-10-19       Impact factor: 3.240

7.  Baroreflex Coupling Assessed by Cross-Compression Entropy.

Authors:  Andy Schumann; Steffen Schulz; Andreas Voss; Susann Scharbrodt; Mathias Baumert; Karl-Jürgen Bär
Journal:  Front Physiol       Date:  2017-05-10       Impact factor: 4.566

8.  Effect of age on complexity and causality of the cardiovascular control: comparison between model-based and model-free approaches.

Authors:  Alberto Porta; Luca Faes; Vlasta Bari; Andrea Marchi; Tito Bassani; Giandomenico Nollo; Natália Maria Perseguini; Juliana Milan; Vinícius Minatel; Audrey Borghi-Silva; Anielle C M Takahashi; Aparecida M Catai
Journal:  PLoS One       Date:  2014-02-24       Impact factor: 3.240

9.  Low-dimensional approximation searching strategy for transfer entropy from non-uniform embedding.

Authors:  Jian Zhang
Journal:  PLoS One       Date:  2018-03-16       Impact factor: 3.240

10.  Disentangling cardiovascular control mechanisms during head-down tilt via joint transfer entropy and self-entropy decompositions.

Authors:  Alberto Porta; Luca Faes; Andrea Marchi; Vlasta Bari; Beatrice De Maria; Stefano Guzzetti; Riccardo Colombo; Ferdinando Raimondi
Journal:  Front Physiol       Date:  2015-10-27       Impact factor: 4.566

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.