| Literature DB >> 32397294 |
Christina A Eichstaedt1,2,3, Jeremias Verweyen1,2, Michael Halank4, Nicola Benjamin1,2, Christine Fischer3, Eckhard Mayer5, Stefan Guth5, Christoph B Wiedenroth5, Benjamin Egenlauf1,2, Satenik Harutyunova1,2, Panagiota Xanthouli1,2, Alberto M Marra1,2,6, Heinrike Wilkens7, Ralf Ewert8, Katrin Hinderhofer3, Ekkehard Grünig1,2.
Abstract
Chronic thromboembolic pulmonary hypertension (CTEPH) is a rare disease which is often caused by recurrent emboli. These are also frequently found in patients with myeloproliferative diseases. While myeloproliferative diseases can be caused by gene defects, the genetic predisposition to CTEPH is largely unexplored. Therefore, the objective of this study was to analyse these genes and further genes involved in pulmonary hypertension in CTEPH patients. A systematic screening was conducted for pathogenic variants using a gene panel based on next generation sequencing. CTEPH was diagnosed according to current guidelines. In this study, out of 40 CTEPH patients 4 (10%) carried pathogenic variants. One patient had a nonsense variant (c.2071A>T p.Lys691*) in the BMPR2 gene and three further patients carried the same pathogenic variant (missense variant, c.1849G>T p.Val617Phe) in the Janus kinase 2 (JAK2) gene. The latter led to a myeloproliferative disease in each patient. The prevalence of this JAK2 variant was significantly higher than expected (p < 0.0001). CTEPH patients may have a genetic predisposition more often than previously thought. The predisposition for myeloproliferative diseases could be an additional risk factor for CTEPH development. Thus, clinical screening for myeloproliferative diseases and genetic testing may be considered also for CTEPH patients.Entities:
Keywords: Janus kinase 2 (JAK2); chronic thromboembolic pulmonary hypertension; genetic predisposition; pulmonary vascular resistance
Mesh:
Substances:
Year: 2020 PMID: 32397294 PMCID: PMC7246715 DOI: 10.3390/ijms21093339
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Clinical characteristics of chronic thromboembolic pulmonary hypertension (CTEPH) patients.
| Parameter | Mean ± SD or % | Cohort (n) * | |
|---|---|---|---|
| Age at diagnosis (years) | 61 | ± 13 | 40 |
| Women (%) | 53 | 40 | |
| 6-minute walking distance (m) | 425 | ± 86 | 34 |
| Previous history of pulmonary embolisms (%) | 87 | 39 | |
| Family history of thrombosis or pulmonary embolisms (%) | 11 | 36 | |
| Presence of myeloproliferative disease (%) | 7.5 | 40 | |
| N-terminal pro-brain natriuretic peptide (ng/l) | 1893 | ± 4186 | 36 |
| 36 | |||
| WHO functional class II (%) | 42 | ||
| WHO functional class III (%) | 58 | ||
|
| 39 | ||
| Pulmonary endarterectomy (%) | 33 | ||
| Pulmonary endarterectomy + medication (%) | 23 | ||
| Balloon pulmonary angioplasty + medication (%) | 10 | ||
| Pulmonary endarterectomy + balloon pulmonary angioplasty + medication (%) | 3 | ||
| Medication only (%) | 31 | ||
|
| |||
| Mean pulmonary artery pressure (mmHg) | 44 | ± 13 | 36 |
| Pulmonary artery wedge pressure (mmHg) | 9 | ± 5 | 34 |
| Pulmonary vascular resistance (Wood Units) | 7.9 | ± 3.6 | 35 |
| Cardiac output (L/min) | 4.7 | ± 1.1 | 28 |
| Cardiac index (L/min/m2) | 2.5 | ± 0.5 | 27 |
* n varies for each parameter. Exact numbers are listed in this column; Abbreviations: SD: standard deviation, WHO: World Health Organization.
Genetic variants class III-V in CTEPH patients identified by next generation sequencing (NGS).
| Gene | RefSeq ID | Exon | c.DNA | Protein | n | Classification * | Prediction Programmes | CADD Score | gnomAD (n) |
|---|---|---|---|---|---|---|---|---|---|
|
| NM_001204 | 12 | c.2071A>T | p.(Lys691*) | 1 | Pathogenic variant | NA (nonsense) | 38.0 | 0 |
|
| NM_001322194 | 14 | c.1849G>T | p.(Val617Phe) | 3 | Pathogenic variant | gain-of-function | 31.0 | 97 |
|
| NM_001203 | 8 | c.556T>A | p.(Ser186Thr) | 1 | VUS (class III) | 3/4 pathogenic | 23.6 | 3 |
|
| NM_001304561 | 4 | c.710-4_710-8 delinsCGCTC | intronic | 1 | VUS (class III) | NA (intronic) | NA | 0 |
|
| NM_000104 | 2 | c.164T>G | p.(Phe55Cys) | 1 | VUS (class III) | 2/4 pathogenic | 22.1 | 1 |
|
| NM_000600 | 3 | c.263A>G | p.(Asn88Ser) | 1 | VUS (class III) | 4/4 pathogenic | 22.4 | 3 |
|
| NM_001322194 | 24 | c.3188G>A | p.(Arg1063His) | 1 | VUS (Class III) | 2/4 pathogenic | 24.8 | 1272 |
|
| NM_002234 | 1 | c.213_245del | p.(Asp72_Pro82del) | 1 | VUS (Class III) | NA (in frame deletion) | NA | 147 |
|
| NM_000435 | 1 | c.30_35dup | p.(Arg12ArgArgArg) | 1 | VUS (class III) | NA (in frame duplication) | NA | 0 |
|
| NM_005359 | 5 | c.565C>T | p.(Arg189Cys) | 1 | VUS (class III) | 3/4 pathogenic | 23.6 | 99 |
|
| NM_005585 | 1 | c.538C>G | p.(Leu189Val) | 1 | VUS (class III) | 3/4 pathogenic | 25.3 | 1 |
|
| NM_007027 | 14 | c.2456A>C | p.(His819Pro) | 1 | VUS (class III) | 1/4 pathogenic | 20.9 | 0 |
Same somatic variant identified in three unrelated patients; * Variants were characterised following guidelines from the American College of Medical Genetics and Genomics [30]; Prediction programmes used: align Grantham variation Grantham deviation (Align-GVGD), sorting intolerant from tolerant (SIFT), PolyPhen2 and MutationTaster; Abbreviations: CADD: combined annotation dependent depletion, c.DNA: coding DNA, CTEPH: chronic thromboembolic pulmonary hypertension, gnomAD: genome aggregation database with 141.456 reported sequences, n: number of CTEPH patients with the variant, NA: not applicable, RefSeq ID: reference sequence identification number, VUS: variant of uncertain significance.
Clinical characteristics of non-variant and variant carriers.
| Parameter | Non-Variant Carriers * | ||||||
|---|---|---|---|---|---|---|---|
| Age at diagnosis (years) | 57 | ± 12 | 49 | 81 | 65 | 66 | 51 |
| Male:Female | 0.8:1 | male | male | male | female | female | |
| 6-minute walking distance (m) | 432 | ± 91 | 360 | NA ** | 411 | 429 | 414 |
| Previous history of pulmonary embolisms (%) | 85 | yes | yes | Yes | yes | yes | |
| Family history of thrombosis / pulmonary embolisms (%) | 8 | absent | absent | absent | absent | PE | |
| Presence of myeloproliferative disease (%) | 0 | absent | yes | yes | yes | absent | |
| N-terminal pro-brain natriuretic peptide (ng/l) | 1566 | ± 4045 | 1386 | 12.630 *** | 2975 | 2533 | 104 |
| WHO functional class [ | 0.9:1 | III | III | II | II | III | |
| PEA (%) | 38 | riociguat | riociguat, macitentan, LTOT | PEA; riociguat, macitentan | PEA; riociguat | PEA; riociguat | |
| Mean pulmonary artery pressure (mmHg) | 45 | ± 14 | 51 | 45 | 35 | 32 | 41 |
| Pulmonary artery wedge pressure (mmHg) | 9 | ± 5 | 2 | 8 | 6 | 12 | 10 |
| Pulmonary vascular resistance (Wood Units) | 7.7 | ± 3.6 | 10.2 | 8.6 | 4.6 | 4.4 | 6.2 |
| Cardiac output (L/min) | 4.7 | ± 1.2 | 4.8 | NA | 5.0 | 4.5 | 5.0 |
| Cardiac index (L/min/m2) | 2.5 | ± 0.6 | 2.2 | 2.3 | 2.9 | 2.5 | 2.6 |
* n varies for each parameter; ** Patient suffered from arthrosis and had difficulty walking; In addition, the same patient had a chronic renal insufficiency; Abbreviations: BMPR2: bone morphogenetic protein receptor, BPA: balloon pulmonary angioplasty, ET: essential thrombocythemia, JAK2: Janus kinase 2, LTOT: long-term oxygen therapy, MF: myelofibrosis, NA: not available, PE: pulmonary embolism, PEA: pulmonary endarterectomy, PV: polycythaemia vera, SD: standard deviation, VUS: variant of uncertain significance, WHO: World Health Organization.