Literature DB >> 32396940

An evolutionarily ancient mechanism for regulation of hemoglobin expression in vertebrate red cells.

Masato Miyata1, Nynke Gillemans1, Dorit Hockman2,3, Jeroen A A Demmers4, Jan-Fang Cheng5, Jun Hou6, Matti Salminen7, Christopher A Fisher8, Stephen Taylor9, Richard J Gibbons8, Jared J Ganis10, Leonard I Zon10, Frank Grosveld1, Eskeatnaf Mulugeta1, Tatjana Sauka-Spengler2, Douglas R Higgs8, Sjaak Philipsen1.   

Abstract

The oxygen transport function of hemoglobin (HB) is thought to have arisen ∼500 million years ago, roughly coinciding with the divergence between jawless (Agnatha) and jawed (Gnathostomata) vertebrates. Intriguingly, extant HBs of jawless and jawed vertebrates were shown to have evolved twice, and independently, from different ancestral globin proteins. This raises the question of whether erythroid-specific expression of HB also evolved twice independently. In all jawed vertebrates studied to date, one of the HB gene clusters is linked to the widely expressed NPRL3 gene. Here we show that the nprl3-linked hb locus of a jawless vertebrate, the river lamprey (Lampetra fluviatilis), shares a range of structural and functional properties with the equivalent jawed vertebrate HB locus. Functional analysis demonstrates that an erythroid-specific enhancer is located in intron 7 of lamprey nprl3, which corresponds to the NPRL3 intron 7 MCS-R1 enhancer of jawed vertebrates. Collectively, our findings signify the presence of an nprl3-linked multiglobin gene locus, which contains a remote enhancer that drives globin expression in erythroid cells, before the divergence of jawless and jawed vertebrates. Different globin genes from this ancestral cluster evolved in the current NPRL3-linked HB genes in jawless and jawed vertebrates. This provides an explanation of the enigma of how, in different species, globin genes linked to the same adjacent gene could undergo convergent evolution.
© 2020 by The American Society of Hematology.

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Year:  2020        PMID: 32396940      PMCID: PMC7531998          DOI: 10.1182/blood.2020004826

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  44 in total

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Authors:  Jim R Hughes; Jan-Fang Cheng; Nicki Ventress; Shyam Prabhakar; Kevin Clark; Eduardo Anguita; Marco De Gobbi; Pieter de Jong; Eddy Rubin; Douglas R Higgs
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-05       Impact factor: 11.205

2.  Molecular phylogeny and divergence times of deuterostome animals.

Authors:  Jaime E Blair; S Blair Hedges
Journal:  Mol Biol Evol       Date:  2005-07-27       Impact factor: 16.240

3.  Prediction of complete gene structures in human genomic DNA.

Authors:  C Burge; S Karlin
Journal:  J Mol Biol       Date:  1997-04-25       Impact factor: 5.469

4.  Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates.

Authors:  Federico G Hoffmann; Juan C Opazo; Jay F Storz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-26       Impact factor: 11.205

5.  Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.

Authors:  Jeramiah J Smith; Shigehiro Kuraku; Carson Holt; Tatjana Sauka-Spengler; Ning Jiang; Michael S Campbell; Mark D Yandell; Tereza Manousaki; Axel Meyer; Ona E Bloom; Jennifer R Morgan; Joseph D Buxbaum; Ravi Sachidanandam; Carrie Sims; Alexander S Garruss; Malcolm Cook; Robb Krumlauf; Leanne M Wiedemann; Stacia A Sower; Wayne A Decatur; Jeffrey A Hall; Chris T Amemiya; Nil R Saha; Katherine M Buckley; Jonathan P Rast; Sabyasachi Das; Masayuki Hirano; Nathanael McCurley; Peng Guo; Nicolas Rohner; Clifford J Tabin; Paul Piccinelli; Greg Elgar; Magali Ruffier; Bronwen L Aken; Stephen M J Searle; Matthieu Muffato; Miguel Pignatelli; Javier Herrero; Matthew Jones; C Titus Brown; Yu-Wen Chung-Davidson; Kaben G Nanlohy; Scot V Libants; Chu-Yin Yeh; David W McCauley; James A Langeland; Zeev Pancer; Bernd Fritzsch; Pieter J de Jong; Baoli Zhu; Lucinda L Fulton; Brenda Theising; Paul Flicek; Marianne E Bronner; Wesley C Warren; Sandra W Clifton; Richard K Wilson; Weiming Li
Journal:  Nat Genet       Date:  2013-02-24       Impact factor: 38.330

6.  Nitric oxide dioxygenase: an enzymic function for flavohemoglobin.

Authors:  P R Gardner; A M Gardner; L A Martin; A L Salzman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

7.  Evolution of hemoglobin and its genes.

Authors:  Ross C Hardison
Journal:  Cold Spring Harb Perspect Med       Date:  2012-12-01       Impact factor: 6.915

8.  Functional and comparative analysis of globin loci in pufferfish and humans.

Authors:  Nynke Gillemans; Tara McMorrow; Rita Tewari; Albert W K Wai; Carola Burgtorf; Dubravka Drabek; Nicki Ventress; An Langeveld; Douglas Higgs; Kian Tan-Un; Frank Grosveld; Sjaak Philipsen
Journal:  Blood       Date:  2002-11-27       Impact factor: 22.113

9.  ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.

Authors:  Jason D Buenrostro; Beijing Wu; Howard Y Chang; William J Greenleaf
Journal:  Curr Protoc Mol Biol       Date:  2015-01-05

10.  A Hox regulatory network of hindbrain segmentation is conserved to the base of vertebrates.

Authors:  Hugo J Parker; Marianne E Bronner; Robb Krumlauf
Journal:  Nature       Date:  2014-09-14       Impact factor: 49.962

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Journal:  Am J Hum Genet       Date:  2022-08-04       Impact factor: 11.043

Review 2.  SEA and GATOR 10 Years Later.

Authors:  Yahir A Loissell-Baltazar; Svetlana Dokudovskaya
Journal:  Cells       Date:  2021-10-08       Impact factor: 6.600

  2 in total

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