Literature DB >> 20660759

Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates.

Federico G Hoffmann1, Juan C Opazo, Jay F Storz.   

Abstract

Natural selection often promotes evolutionary innovation by coopting preexisting genes for new functions, and this process may be greatly facilitated by gene duplication. Here we report an example of cooptive convergence where paralogous members of the globin gene superfamily independently evolved a specialized O(2) transport function in the two deepest branches of the vertebrate family tree. Specifically, phylogenetic evidence demonstrates that erythroid-specific O(2) transport hemoglobins evolved independently from different ancestral precursor proteins in jawed vertebrates (gnathostomes) and jawless fish (cyclostomes, represented by lamprey and hagfish). A comprehensive phylogenetic analysis of the vertebrate globin gene superfamily revealed that the erythroid hemoglobins of cyclostomes are orthologous to the cytoglobin protein of gnathostome vertebrates, a hexacoordinate globin that has no O(2) transport function and that is predominantly expressed in fibroblasts and related cell types. The phylogeny reconstruction also revealed that vertebrate-specific globins are grouped into four main clades: (i) cyclostome hemoglobin + cytoglobin, (ii) myoglobin + globin E, (iii) globin Y, and (iv) the alpha- and beta-chain hemoglobins of gnathostomes. In the hemoglobins of gnathostomes and cyclostomes, multisubunit quaternary structures provide the basis for cooperative O(2) binding and allosteric regulation by coupling the effects of ligand binding at individual subunits with interactions between subunits. However, differences in numerous structural details belie their independent origins. This example of convergent evolution of protein function provides an impressive demonstration of the ability of natural selection to cobble together complex design solutions by tinkering with different variations of the same basic protein scaffold.

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Year:  2010        PMID: 20660759      PMCID: PMC2922537          DOI: 10.1073/pnas.1006756107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  68 in total

1.  An approximately unbiased test of phylogenetic tree selection.

Authors:  Hidetoshi Shimodaira
Journal:  Syst Biol       Date:  2002-06       Impact factor: 15.683

2.  Cytoglobin: a novel globin type ubiquitously expressed in vertebrate tissues.

Authors:  Thorsten Burmester; Bettina Ebner; Bettina Weich; Thomas Hankeln
Journal:  Mol Biol Evol       Date:  2002-04       Impact factor: 16.240

3.  Water regulates oxygen binding in hagfish (Myxine glutinosa) hemoglobin.

Authors:  Gabriele Müller; Angela Fago; Roy E Weber
Journal:  J Exp Biol       Date:  2003-04       Impact factor: 3.312

4.  Stereochemistry of cooperative mechanisms in hemoglobin.

Authors:  M F Perutz; G Fermi; B Luisi; B Shaanan; R C Liddington
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

5.  Haemoglobin function in intact Lampetra fluviatilis erythrocytes.

Authors:  M Nikinmaa
Journal:  Respir Physiol       Date:  1993-03

6.  Bicarbonate binding to hemoglobin links oxygen and carbon dioxide transport in hagfish.

Authors:  A Fago; H Malte; N Dohn
Journal:  Respir Physiol       Date:  1999-05-03

7.  High-resolution structure of human cytoglobin: identification of extra N- and C-termini and a new dimerization mode.

Authors:  Masatomo Makino; Hiroshi Sugimoto; Hitomi Sawai; Norifumi Kawada; Katsutoshi Yoshizato; Yoshitsugu Shiro
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-05-12

8.  What is the function of neuroglobin?

Authors:  Thorsten Burmester; Thomas Hankeln
Journal:  J Exp Biol       Date:  2009-05       Impact factor: 3.312

9.  THE SIX HEMOGLOBINS OF THE SEA LAMPREY (PETROMYZON MARINUS).

Authors:  N M RUMEN; W E LOVE
Journal:  Arch Biochem Biophys       Date:  1963-10       Impact factor: 4.013

Review 10.  Self-association, cooperativity and supercooperativity of oxygen binding by hemoglobins.

Authors:  A F Riggs
Journal:  J Exp Biol       Date:  1998-04       Impact factor: 3.312

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  38 in total

1.  Androglobin: a chimeric globin in metazoans that is preferentially expressed in Mammalian testes.

Authors:  David Hoogewijs; Bettina Ebner; Francesca Germani; Federico G Hoffmann; Andrej Fabrizius; Luc Moens; Thorsten Burmester; Sylvia Dewilde; Jay F Storz; Serge N Vinogradov; Thomas Hankeln
Journal:  Mol Biol Evol       Date:  2011-11-24       Impact factor: 16.240

2.  Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates.

Authors:  Federico G Hoffmann; Juan C Opazo; Jay F Storz
Journal:  Mol Biol Evol       Date:  2011-09-30       Impact factor: 16.240

3.  Evolution of the globin gene family in deuterostomes: lineage-specific patterns of diversification and attrition.

Authors:  Federico G Hoffmann; Juan C Opazo; David Hoogewijs; Thomas Hankeln; Bettina Ebner; Serge N Vinogradov; Xavier Bailly; Jay F Storz
Journal:  Mol Biol Evol       Date:  2012-01-24       Impact factor: 16.240

4.  The globin gene repertoire of lampreys: convergent evolution of hemoglobin and myoglobin in jawed and jawless vertebrates.

Authors:  Kim Schwarze; Kevin L Campbell; Thomas Hankeln; Jay F Storz; Federico G Hoffmann; Thorsten Burmester
Journal:  Mol Biol Evol       Date:  2014-07-23       Impact factor: 16.240

5.  Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid.

Authors:  M Sabrina Pankey; Vladimir N Minin; Greg C Imholte; Marc A Suchard; Todd H Oakley
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-21       Impact factor: 11.205

Review 6.  Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution.

Authors:  Sangeet Lamichhaney; Daren C Card; Phil Grayson; João F R Tonini; Gustavo A Bravo; Kathrin Näpflin; Flavia Termignoni-Garcia; Christopher Torres; Frank Burbrink; Julia A Clarke; Timothy B Sackton; Scott V Edwards
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-03       Impact factor: 6.237

7.  Simultaneous Bayesian estimation of alignment and phylogeny under a joint model of protein sequence and structure.

Authors:  Joseph L Herman; Christopher J Challis; Ádám Novák; Jotun Hein; Scott C Schmidler
Journal:  Mol Biol Evol       Date:  2014-06-04       Impact factor: 16.240

Review 8.  Gene Duplication and Evolutionary Innovations in Hemoglobin-Oxygen Transport.

Authors:  Jay F Storz
Journal:  Physiology (Bethesda)       Date:  2016-05

Review 9.  Gene duplication, genome duplication, and the functional diversification of vertebrate globins.

Authors:  Jay F Storz; Juan C Opazo; Federico G Hoffmann
Journal:  Mol Phylogenet Evol       Date:  2012-07-27       Impact factor: 4.286

10.  Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters.

Authors:  Ola F Wetten; Alexander J Nederbragt; Robert C Wilson; Kjetill S Jakobsen; Rolf B Edvardsen; Øivind Andersen
Journal:  BMC Evol Biol       Date:  2010-10-20       Impact factor: 3.260

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