Literature DB >> 32396809

Absolutely robust controllers for chemical reaction networks.

Jinsu Kim1, German Enciso1.   

Abstract

In this work, we design a type of controller that consists of adding a specific set of reactions to an existing mass-action chemical reaction network in order to control a target species. This set of reactions is effective for both deterministic and stochastic networks, in the latter case controlling the mean as well as the variance of the target species. We employ a type of network property called absolute concentration robustness (ACR). We provide applications to the control of a multisite phosphorylation model as well as a receptor-ligand signalling system. For this framework, we use the so-called deficiency zero theorem from chemical reaction network theory as well as multiscaling model reduction methods. We show that the target species has approximately Poisson distribution with the desired mean. We further show that ACR controllers can bring robust perfect adaptation to a target species and are complementary to a recently introduced antithetic feedback controller used for stochastic chemical reactions.

Keywords:  Poission distribution; absolute concentration robustness; control; deficiency zero; multiscaling; reaction networks

Mesh:

Year:  2020        PMID: 32396809      PMCID: PMC7276553          DOI: 10.1098/rsif.2020.0031

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  34 in total

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Journal:  Bull Math Biol       Date:  2014-12-31       Impact factor: 1.758

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7.  Perfect and Near-Perfect Adaptation in Cell Signaling.

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8.  Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system.

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Journal:  Nat Commun       Date:  2016-10-31       Impact factor: 14.919

10.  Long-term dynamics of multisite phosphorylation.

Authors:  Boris Y Rubinstein; Henry H Mattingly; Alexander M Berezhkovskii; Stanislav Y Shvartsman
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  1 in total

1.  A hidden integral structure endows absolute concentration robust systems with resilience to dynamical concentration disturbances.

Authors:  Daniele Cappelletti; Ankit Gupta; Mustafa Khammash
Journal:  J R Soc Interface       Date:  2020-10-28       Impact factor: 4.118

  1 in total

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