Literature DB >> 32393820

Illuminating dendritic function with computational models.

Panayiota Poirazi1, Athanasia Papoutsi2.   

Abstract

Dendrites have always fascinated researchers: from the artistic drawings by Ramon y Cajal to the beautiful recordings of today, neuroscientists have been striving to unravel the mysteries of these structures. Theoretical work in the 1960s predicted important dendritic effects on neuronal processing, establishing computational modelling as a powerful technique for their investigation. Since then, modelling of dendrites has been instrumental in driving neuroscience research in a targeted manner, providing experimentally testable predictions that range from the subcellular level to the systems level, and their relevance extends to fields beyond neuroscience, such as machine learning and artificial intelligence. Validation of modelling predictions often requires - and drives - new technological advances, thus closing the loop with theory-driven experimentation that moves the field forward. This Review features the most important, to our understanding, contributions of modelling of dendritic computations, including those pending experimental verification, and highlights studies of successful interactions between the modelling and experimental neuroscience communities.

Mesh:

Year:  2020        PMID: 32393820     DOI: 10.1038/s41583-020-0301-7

Source DB:  PubMed          Journal:  Nat Rev Neurosci        ISSN: 1471-003X            Impact factor:   34.870


  219 in total

1.  Linear summation of excitatory inputs by CA1 pyramidal neurons.

Authors:  S Cash; R Yuste
Journal:  Neuron       Date:  1999-02       Impact factor: 17.173

Review 2.  Imaging calcium in neurons.

Authors:  Christine Grienberger; Arthur Konnerth
Journal:  Neuron       Date:  2012-03-08       Impact factor: 17.173

Review 3.  Novel approaches to monitor and manipulate single neurons in vivo.

Authors:  Michael Brecht; Michale S Fee; Olga Garaschuk; Fritjof Helmchen; Troy W Margrie; Karel Svoboda; Pavel Osten
Journal:  J Neurosci       Date:  2004-10-20       Impact factor: 6.167

4.  Theory of physiological properties of dendrites.

Authors:  W RALL
Journal:  Ann N Y Acad Sci       Date:  1962-03-02       Impact factor: 5.691

5.  An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice.

Authors:  E De Schutter; J M Bower
Journal:  J Neurophysiol       Date:  1994-01       Impact factor: 2.714

6.  Active cortical dendrites modulate perception.

Authors:  Naoya Takahashi; Thomas G Oertner; Peter Hegemann; Matthew E Larkum
Journal:  Science       Date:  2016-12-23       Impact factor: 47.728

7.  General Anesthesia Decouples Cortical Pyramidal Neurons.

Authors:  Mototaka Suzuki; Matthew E Larkum
Journal:  Cell       Date:  2020-02-20       Impact factor: 41.582

8.  Learning drives differential clustering of axodendritic contacts in the barn owl auditory system.

Authors:  Thomas J McBride; Adrian Rodriguez-Contreras; Angela Trinh; Robert Bailey; William M Debello
Journal:  J Neurosci       Date:  2008-07-02       Impact factor: 6.167

9.  Optogenetics.

Authors:  Karl Deisseroth
Journal:  Nat Methods       Date:  2010-12-20       Impact factor: 28.547

Review 10.  The 40-year history of modeling active dendrites in cerebellar Purkinje cells: emergence of the first single cell "community model".

Authors:  James M Bower
Journal:  Front Comput Neurosci       Date:  2015-10-20       Impact factor: 2.380

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  25 in total

Review 1.  Predicting brain organization with a computational model: 50-year perspective on lateral inhibition and oscillatory gating by dendrodendritic synapses.

Authors:  Gordon M Shepherd; Michael L Hines; Michele Migliore; Wei R Chen; Charles A Greer
Journal:  J Neurophysiol       Date:  2020-07-08       Impact factor: 2.714

Review 2.  Modeling Dendrites and Spatially-Distributed Neuronal Membrane Properties.

Authors:  Spyridon Chavlis; Panayiota Poirazi
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

3.  Inferring monosynaptic connections from paired dendritic spine Ca2+imaging and large-scale recording of extracellular spiking.

Authors:  Xiaohan Xue; Alessio Paolo Buccino; Sreedhar Saseendran Kumar; Andreas Hierlemann; Julian Bartram
Journal:  J Neural Eng       Date:  2022-08-23       Impact factor: 5.043

Review 4.  What is the dynamical regime of cerebral cortex?

Authors:  Yashar Ahmadian; Kenneth D Miller
Journal:  Neuron       Date:  2021-08-30       Impact factor: 18.688

5.  Avoiding Catastrophe: Active Dendrites Enable Multi-Task Learning in Dynamic Environments.

Authors:  Abhiram Iyer; Karan Grewal; Akash Velu; Lucas Oliveira Souza; Jeremy Forest; Subutai Ahmad
Journal:  Front Neurorobot       Date:  2022-04-29       Impact factor: 3.493

Review 6.  Dendritic Excitability and Synaptic Plasticity In Vitro and In Vivo.

Authors:  Kevin C Gonzalez; Attila Losonczy; Adrian Negrean
Journal:  Neuroscience       Date:  2022-01-05       Impact factor: 3.708

Review 7.  Shedding light on learning and memory: optical interrogation of the synaptic circuitry.

Authors:  Ju Lu; Yi Zuo
Journal:  Curr Opin Neurobiol       Date:  2020-12-03       Impact factor: 6.627

8.  Do Biological Constraints Impair Dendritic Computation?

Authors:  Ilenna Simone Jones; Konrad Paul Kording
Journal:  Neuroscience       Date:  2021-08-06       Impact factor: 3.708

9.  Reorganization of CA1 dendritic dynamics by hippocampal sharp-wave ripples during learning.

Authors:  Sebi V Rolotti; Heike Blockus; Fraser T Sparks; James B Priestley; Attila Losonczy
Journal:  Neuron       Date:  2022-01-17       Impact factor: 18.688

Review 10.  Active Dendrites and Local Field Potentials: Biophysical Mechanisms and Computational Explorations.

Authors:  Manisha Sinha; Rishikesh Narayanan
Journal:  Neuroscience       Date:  2021-09-08       Impact factor: 3.590

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